DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 6.076e-19 Identity = 51/177 (28.81%), Postives = 94/177 (53.11%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFKT----KKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669 K+F+G LP D + F + G + + ++ +R T Q RGFGF+T + +K +E + + +NG+ + + + +G + +T +I+VG IP + + L+ FS++GKV+ +++ D ET RSRGFGFV SE + + ++ + + G + + AE + N Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRN 313
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19 Identity = 53/198 (26.77%), Postives = 102/198 (51.52%), Query Frame = 1 Query: 91 DQAMGSKSK---SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 D++ G S+ S+ + + K+F+G L D F + G + + ++ +R T Q RGFGF+T + + +E + + +NG+ + + + P+GS + + +++VG +P V L+ FS++GKV+E +++ D ET RSRGFGFV + ++E +S + ++ G + + AE + Sbjct: 126 DESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18 Identity = 48/180 (26.67%), Postives = 95/180 (52.78%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFK-----------TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 KIF+G LP A + F + G++ ++ D+ TG+ RGFGF+T + V+ + + + ++G+ + + P ++ F+ + +++VG + V +D L+ FS+ GKV++ +++ D ++ RSRGFGFV + S E V+ + + +D+ G + + AE + Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 267
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18 Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 S + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 183
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18 Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 S + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 195
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18 Identity = 45/150 (30.00%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 S + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 190
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_CHICK (TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18 Identity = 53/170 (31.18%), Postives = 89/170 (52.35%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669 + + GLP TT ++F +G++ + KD TG +GFGF+ + D KV+ H+I+G+ + K K S + +++K+FVG ++ DEL+ FF++YG+V++ I + R F FV F ++V + G + + G V I AEPK +SN Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNSKQS-PDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLC--GEDLIIKGISVHISNAEPKHNSN 267
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18 Identity = 56/194 (28.87%), Postives = 103/194 (53.09%), Query Frame = 1 Query: 106 SKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYA---DPSVVDKVIEDTHIINGKQVEIKRTIPKGSG------QSKDFK----TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKA 648 + S S + DG ++++G +P++ ++G I + +M D+Y+G+ R FGF+T D + V + + DT I G+++++ T G Q++D + K+++G + +V+ + LK+FFS+ GKVL ++ R T++S GFGFV F SEE V+ + N + G ++ + KA Sbjct: 68 TSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEI-GGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18 Identity = 44/150 (29.33%), Postives = 81/150 (54.00%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 S + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y DP+ DK I + +NG +++ K + S + ++V +P ++++ E++ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 32 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 178
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17 Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |