DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S  D+ +T D  S   + +  LP++ T       FG  G+I    +++D+ TGQ  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S  D+ +T D  S   + +  LP++ T       FG  G+I    +++D+ TGQ  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 44/150 (29.33%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S   + +  LP++ T       FG  G+I    +++D+ TGQ  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   65 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 211          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 43/141 (30.50%), Postives = 77/141 (54.61%), Query Frame = 1
Query:  175 LPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            LP++ T       FG  G+I    +++D+ TGQ  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 47/186 (25.27%), Postives = 94/186 (50.54%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFK-----------------TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            KIF+G L      A   + F + G++    ++ D+ TG+ RGFGF+T +    V+   +  + + ++G+ + +    P    ++  F+                 + +++VG +   V +D L+  FS+ GKV++ +++ D ++ RSRGFGFV + S E V+  +   + +D+ G  + +  AE +
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 51/192 (26.56%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK-----------------------GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            K+F+G LP +   A   + F   G++    ++ D+ TG+ RGFGF+T +  S V+   +  + + ++G+ + +    P                        G G S      +++VG +   V +  L++ FS+ GKV+E ++I D ++ RS+GFGFV +DS + V   +   +  D+ G Q+ + +AE +
Sbjct:   92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 44/151 (29.14%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNR-SRGFGFVIFDSEEVVDEML 594
            S   + +  LP++ T   F   FG  G+I    +++D+ TGQ  G+GF+ Y DP+  DK I   + +NG +++ K   +      S   +   ++V  +P ++++ E++  FS+YG+++  +I+ D  T   SRG GF+ FD     +E +
Sbjct:   33 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAI 180          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_MOUSE (TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 51/170 (30.00%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669
            + + GLP  TT      +F  +G++    + KD  TG  +GFGF+ + +     KV+   H+I+G+  + K    K S   +  +++K+FVG     ++ +EL+ FF +YG+V++  I +       R F FV F  ++V   +   G  + + G  V I  AEPK +SN
Sbjct:  106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-PDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDKVAQSLC--GEDLIIKGISVHISNAEPKHNSN 267          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 53/174 (30.46%), Postives = 84/174 (48.28%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L         +  F  +G+I    + +D   G  +G+GF+ Y       + I+  +  ++N K+V +   IPK   QSK  + K     I+V  I   V++DE +  F KYG V    + RD ET +SRGFGFV F S E   + + + N  +  G  + + +A+ K
Sbjct:  149 GNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKK 321          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 44/151 (29.14%), Postives = 80/151 (52.98%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT-GQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S   + +  LP++ T       FG  G+I    +++D+ T GQ  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   64 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 211          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
ELAV2_MOUSE1.146e-1729.63ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN1.146e-1729.63ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ELAV2_XENTR2.553e-1729.33ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_RAT5.687e-1730.50ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ROC1_NICPL9.700e-1725.2730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH9.700e-1726.56Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ELAV3_XENTR1.267e-1629.14ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
TADBP_MOUSE1.655e-1630.00TAR DNA-binding protein 43 OS=Mus musculus GN=Tard... [more]
PABP_MAGGR1.655e-1630.46Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_XENLA6.287e-1629.14ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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