DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17 Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17 Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1 Query: 112 SKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 S D+ +T D S + + LP++ T FG G+I +++D+ TGQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 27 SPVDSGNTED--SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17 Identity = 44/150 (29.33%), Postives = 80/150 (53.33%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 S + + LP++ T FG G+I +++D+ TGQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 65 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 211
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17 Identity = 43/141 (30.50%), Postives = 77/141 (54.61%), Query Frame = 1 Query: 175 LPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 LP++ T FG G+I +++D+ TGQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAI 183
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17 Identity = 47/186 (25.27%), Postives = 94/186 (50.54%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSKDFK-----------------TKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 KIF+G L A + F + G++ ++ D+ TG+ RGFGF+T + V+ + + + ++G+ + + P ++ F+ + +++VG + V +D L+ FS+ GKV++ +++ D ++ RSRGFGFV + S E V+ + + +D+ G + + AE + Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEAR 273
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17 Identity = 51/192 (26.56%), Postives = 95/192 (49.48%), Query Frame = 1 Query: 157 KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPK-----------------------GSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 K+F+G LP + A + F G++ ++ D+ TG+ RGFGF+T + S V+ + + + ++G+ + + P G G S +++VG + V + L++ FS+ GKV+E ++I D ++ RS+GFGFV +DS + V + + D+ G Q+ + +AE + Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16 Identity = 44/151 (29.14%), Postives = 81/151 (53.64%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNR-SRGFGFVIFDSEEVVDEML 594 S + + LP++ T F FG G+I +++D+ TGQ G+GF+ Y DP+ DK I + +NG +++ K + S + ++V +P ++++ E++ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 33 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAI 180
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: TADBP_MOUSE (TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16 Identity = 51/170 (30.00%), Postives = 87/170 (51.18%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSN 669 + + GLP TT +F +G++ + KD TG +GFGF+ + + KV+ H+I+G+ + K K S + +++K+FVG ++ +EL+ FF +YG+V++ I + R F FV F ++V + G + + G V I AEPK +SN Sbjct: 106 LIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-PDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDKVAQSLC--GEDLIIKGISVHISNAEPKHNSN 267
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16 Identity = 53/174 (30.46%), Postives = 84/174 (48.28%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 G +FI L + F +G+I + +D G +G+GF+ Y + I+ + ++N K+V + IPK QSK + K I+V I V++DE + F KYG V + RD ET +SRGFGFV F S E + + + N + G + + +A+ K Sbjct: 149 GNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKK 321
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16 Identity = 44/151 (29.14%), Postives = 80/151 (52.98%), Query Frame = 1 Query: 148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYT-GQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594 S + + LP++ T FG G+I +++D+ T GQ G+GF+ Y DP +K I + +NG +++ K + S + ++V G+P ++++ EL+ FS+YG+++ +I+ D T SRG GF+ FD +E + Sbjct: 64 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 211 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |