DR404964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16 Identity = 51/186 (27.42%), Postives = 94/186 (50.54%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSK--------------------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 I++ + +TT F + F +YG+I + + KD G+P+GFGF+ + D + K +E+ +NGK+ + + + G Q K F+ +F+ + S+ +++LK F+ YG + +++RD E N S+GFGFV F S E + +++ N +AG + + A+ K Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDA-EGKPKGFGFVNFVDHNAAAKAVEE---LNGKEFK-SQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGN-SKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRK 412
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15 Identity = 50/172 (29.07%), Postives = 87/172 (50.58%), Query Frame = 1 Query: 115 KSDNPHTGDGASPG--KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIIN-GKQVEIKRTIPKGSGQSKDFKTK---------------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEE 576 + D + GA P +++ LPK+ T K FGKYGDI+ +V+MKD+ +G R FGF+ + P +E + I+ G+ V K S + ++ + K +++ + SV++++LK FS+YG V +++ + + SRGFGFV + + E Sbjct: 210 RQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPE 379
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15 Identity = 48/183 (26.23%), Postives = 96/183 (52.46%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGSGQSK--------------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660 +++ + ++T+ F + FGKYG IT +V+ KD G+ RGFGF+ + D + K +++ + + G+++ + R K + ++ +FV + S+ +++LK F+ +G + +++RD ET SRGFGFV F + E + +++ N +AG + + A+ K+ Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDS-EGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKE 401 HSP 2 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 48/174 (27.59%), Postives = 85/174 (48.85%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSK--DFKTK--KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 G I+I L + ++ F +G+I + D G RGFGF+ + + S IE D ++N ++V + + K QSK + K K ++V I S++E + F KYGK+ + +D E + RGFGFV F+ + + + N ++ G ++ + +A+ K Sbjct: 126 GNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKK 297
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15 Identity = 49/174 (28.16%), Postives = 89/174 (51.15%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI----KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 G +FI L K T +HF +G I S +M D +G+ F+ + + S D+ IE+ + ++ G +V + R + +SK + +++ + ++ LK+ FSKYGK L +++ D + +S+GFGFV FDS E + + + N D+ G + + +A+ K Sbjct: 98 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15 Identity = 50/174 (28.74%), Postives = 87/174 (50.00%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657 G IFI L + F +G+I + +D + G +G+GF+ Y + I+ + ++N K+V + IPK QSK + K ++V I + V+++E + F+K+G+V + RD E +SRGFGFV F + E + + + N D G + + +A+ K Sbjct: 148 GNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKK 319
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14 Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 1 Query: 154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK--KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEE 576 G IFI L + + + F +G+I + D +GQ +G+GF+ YA+ K IE + ++N KQV + + + S KTK ++V + S ++D+LKN F +YGK+ +++D E +S+GFGFV F++ + Sbjct: 124 GNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENAD 266 HSP 2 Score: 74.7146 bits (182), Expect = 4.982e-13 Identity = 49/178 (27.53%), Postives = 88/178 (49.44%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSK--------------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK--GNMIDMAGTQVEI 639 +++ L + TT FG+YG IT +V+MKD G+ +GFGF+ + + + +E + H + K+ + R K +++ F++ ++V + S+S+++LK FS +G V +++RD S+G GFV F + E E +S+ G MI+ V I Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14 Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 1 Query: 160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 612 + + LP+D T F G I IMKD TG G+ F+ +A I+ + I + +K + + G+S K ++V +P ++++DEL+ F KYG +++ I+RD T R RG FV F+ E E +S N + Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGES--IKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNV 252
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14 Identity = 44/157 (28.03%), Postives = 75/157 (47.77%), Query Frame = 1 Query: 142 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 612 G + + + LP+D T F G I IMKD TG G+ F+ +A I+ + + + +K + + G+S K ++V +P ++++DEL+ F KYG +++ I+RD T + RG FV F+ E E +S N + Sbjct: 81 GCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGES--IKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNV 235
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14 Identity = 44/159 (27.67%), Postives = 78/159 (49.06%), Query Frame = 1 Query: 136 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 612 G G++ + + LP+D T F G I IM+D TG G+ F+ +A + + I+ + I + +K + + G+S K ++V +P ++++D+L F KYG +++ I+RD T + RG FV F+ E E +S N + Sbjct: 104 GGGSNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGES--IKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNV 260
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3) HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14 Identity = 47/180 (26.11%), Postives = 87/180 (48.33%), Query Frame = 1 Query: 97 AMGSKSKSDNP-HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK-GNMIDMAGTQ 630 ++G+ + S N ++G S + + LP+D F G I IM+D TG G+GF+ + + + I + + I + IK + + G+ + ++V + S+++++L+ F KYG++++ I+RD T RG F+ F+ E E +S N+I GTQ Sbjct: 58 SVGNMANSTNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQ--LRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQ 235 The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 155
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bpback to top |