DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 51/186 (27.42%), Postives = 94/186 (50.54%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSK--------------------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            I++  +  +TT   F + F +YG+I  + + KD   G+P+GFGF+ + D +   K +E+   +NGK+ +  + +  G  Q K                     F+   +F+  +  S+ +++LK  F+ YG +   +++RD E N S+GFGFV F S E   + +++ N   +AG  + +  A+ K
Sbjct:  233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDA-EGKPKGFGFVNFVDHNAAAKAVEE---LNGKEFK-SQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGN-SKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRK 412          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.075e-15
Identity = 50/172 (29.07%), Postives = 87/172 (50.58%), Query Frame = 1
Query:  115 KSDNPHTGDGASPG--KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIIN-GKQVEIKRTIPKGSGQSKDFKTK---------------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEE 576
            + D   +  GA P    +++  LPK+ T     K FGKYGDI+ +V+MKD+ +G  R FGF+ +  P      +E  + I+ G+ V       K S + ++ + K                +++  +  SV++++LK  FS+YG V   +++ + +   SRGFGFV + + E
Sbjct:  210 RQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPE 379          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 48/183 (26.23%), Postives = 96/183 (52.46%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGSGQSK--------------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            +++  + ++T+   F + FGKYG IT +V+ KD   G+ RGFGF+ + D +   K +++ + +   G+++ + R   K     +               ++   +FV  +  S+ +++LK  F+ +G +   +++RD ET  SRGFGFV F + E   + +++ N   +AG  + +  A+ K+
Sbjct:  221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDS-EGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKE 401          

HSP 2 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 48/174 (27.59%), Postives = 85/174 (48.85%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSK--DFKTK--KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G I+I  L       + ++ F  +G+I    +  D   G  RGFGF+ + + S     IE  D  ++N ++V +   + K   QSK  + K K   ++V  I    S++E +  F KYGK+    + +D E  + RGFGFV F+      + + + N ++  G ++ + +A+ K
Sbjct:  126 GNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKK 297          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.323e-15
Identity = 49/174 (28.16%), Postives = 89/174 (51.15%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEI----KRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L K     T  +HF  +G I  S +M D      +G+ F+ + + S  D+ IE+ +  ++ G +V +     R   +   +SK  +   +++      + ++ LK+ FSKYGK L  +++ D  + +S+GFGFV FDS E   + + + N  D+ G  + + +A+ K
Sbjct:   98 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 50/174 (28.74%), Postives = 87/174 (50.00%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G IFI  L         +  F  +G+I    + +D + G  +G+GF+ Y       + I+  +  ++N K+V +   IPK   QSK  + K     ++V  I + V+++E +  F+K+G+V    + RD E  +SRGFGFV F + E   + + + N  D  G  + + +A+ K
Sbjct:  148 GNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKK 319          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 46/145 (31.72%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK--KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEE 576
            G IFI  L +   +   +  F  +G+I    +  D  +GQ +G+GF+ YA+     K IE  +  ++N KQV +   + +    S   KTK   ++V  +  S ++D+LKN F +YGK+    +++D E  +S+GFGFV F++ +
Sbjct:  124 GNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENAD 266          

HSP 2 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 49/178 (27.53%), Postives = 88/178 (49.44%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGSGQSK--------------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK--GNMIDMAGTQVEI 639
            +++  L + TT       FG+YG IT +V+MKD   G+ +GFGF+ + +     + +E  + H  + K+  + R   K   +++               F++  ++V  +  S+S+++LK  FS +G V   +++RD     S+G GFV F + E   E +S+  G MI+     V I
Sbjct:  217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAI 392          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 612
            + +  LP+D T       F   G I    IMKD  TG   G+ F+ +A        I+  + I  +   +K +  +  G+S   K   ++V  +P ++++DEL+  F KYG +++  I+RD  T R RG  FV F+  E   E +S  N +
Sbjct:  104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGES--IKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALNNV 252          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 44/157 (28.03%), Postives = 75/157 (47.77%), Query Frame = 1
Query:  142 GASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 612
            G +   + +  LP+D T       F   G I    IMKD  TG   G+ F+ +A        I+  + +  +   +K +  +  G+S   K   ++V  +P ++++DEL+  F KYG +++  I+RD  T + RG  FV F+  E   E +S  N +
Sbjct:   81 GCNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGES--IKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNV 235          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 44/159 (27.67%), Postives = 78/159 (49.06%), Query Frame = 1
Query:  136 GDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMI 612
            G G++   + +  LP+D T       F   G I    IM+D  TG   G+ F+ +A  +   + I+  + I  +   +K +  +  G+S   K   ++V  +P ++++D+L   F KYG +++  I+RD  T + RG  FV F+  E   E +S  N +
Sbjct:  104 GGGSNGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGES--IKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALNNV 260          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 47/180 (26.11%), Postives = 87/180 (48.33%), Query Frame = 1
Query:   97 AMGSKSKSDNP-HTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK-GNMIDMAGTQ 630
            ++G+ + S N  ++G   S   + +  LP+D         F   G I    IM+D  TG   G+GF+ +   +   + I + + I  +   IK +  +  G+    +   ++V  +  S+++++L+  F KYG++++  I+RD  T   RG  F+ F+  E   E +S   N+I   GTQ
Sbjct:   58 SVGNMANSTNSLNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQ--LRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQ 235          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
PABP_KLULA8.212e-1627.42Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_ARATH4.075e-1529.07Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP_ASHGO5.323e-1526.23Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAB4L_HUMAN5.323e-1528.16Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PABP_NEUCR6.952e-1528.74Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP2_ARATH1.186e-1431.72Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
SXL_MUSDO2.642e-1429.80Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
SXL_CHRRU3.450e-1428.03Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
SXL_CERCA3.450e-1427.67Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
SXL_MEGSC5.885e-1426.11Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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