DR404964

Overview
NameDR404964
Unique NameDR404964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 50/180 (27.78%), Postives = 86/180 (47.78%), Query Frame = 1
Query:  118 SDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK-GNMIDMAGTQ-VEIKKAE 651
            SD+      AS   + +  LP+D T       F   G I    IM+D  TG   G+ F+ +       + I+  + I  +   +K +  +  G+S   K   ++V  +P ++++D+L   F KYG +++  I+RD  T R RG  FV ++  E   E +S   N+I   G+Q + ++ AE
Sbjct:  113 SDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES--IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAE 290          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 47/174 (27.01%), Postives = 83/174 (47.70%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L         +  F  +G+I    + +D + G  +G+GF+ Y         I+  +  ++N K+V +   I K   QSK  + K     ++V  I    +E+E ++ F K+G++    + RD E+ +SRGFGFV F S +     +   N  D  G ++ + +A+ K
Sbjct:  143 GNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKK 315          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 49/180 (27.22%), Postives = 84/180 (46.67%), Query Frame = 1
Query:   97 AMGSKSKSDNPHTGDGASPG-KIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSK-GNMIDMAGTQ 630
            ++GS    D+    D  S    + +  LP+D T       F   G I    IM+D  TG   G+ F+ +       + I+  + I  +   +K +  +  G+S   K   ++V  +P ++++D+L   F KYG +++  I+RD  T R RG  FV ++  E   E +S   N+I   G+Q
Sbjct:  107 SLGSGGSDDHMMMHDQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES--IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 284          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 47/191 (24.61%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE--DTHIINGKQVEIK-RTIPKGSGQSKDFKTK-------------KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKKSSNPPP 678
            G++++G LP   T +  ++ F + G + +  I+ DR T + RGF F+T        + I   D   + G+ V++    +P+G G+ +    K             K++V  +  +++   L++ F+     +  ++I D  + RSRGFGF+ F S E ++  L   N +++ G  + +  A  K   + PP
Sbjct:  114 GRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRG-GEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPP 303          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 45/179 (25.14%), Postives = 81/179 (45.25%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTG-----------------------------QPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S   + +  LP++ T   F   FG  G+I    +++D+ TG                             Q  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 224          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 45/179 (25.14%), Postives = 81/179 (45.25%), Query Frame = 1
Query:  148 SPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTG-----------------------------QPRGFGFITYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEML 594
            S   + +  LP++ T   F   FG  G+I    +++D+ TG                             Q  G+GF+ Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++++ EL+  FS+YG+++  +I+ D  T  SRG GF+ FD     +E +
Sbjct:   49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 224          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 46/183 (25.14%), Postives = 93/183 (50.82%), Query Frame = 1
Query:  160 IFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHI--INGKQVEIKRTIPKGSGQSK--------------DFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPKK 660
            ++I  L  + T   F+  FG++G+IT   ++KD+   +PRGFGF+ YA+     K +++ +     GK++ + R   K   + +               ++   +F+  +   V ++ LK  FS +G +   +I+ D E  +S+GFGFV + + E  ++ +++ N   +AG  + +  A+ K+
Sbjct:  263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 50/180 (27.78%), Postives = 89/180 (49.44%), Query Frame = 1
Query:  139 DGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH---IINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGN-MIDMAGTQ--VEIKKAEPKK 660
            D +S  K+F+G +P+  T      +F ++G++ +  ++KD+ TGQ +G  F+ YA     D+ I   H    + G    ++     G  +       K+FVG +    +E E++  F ++G V +  ++RD E  +SRG GFV + S+E     +   N    M G    + ++ AEPK+
Sbjct:  115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 49/174 (28.16%), Postives = 84/174 (48.28%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L         +  F  +G+I    + +D   G  +G+GF+ Y       + I+  +  ++N K+V +   IPK   QSK  + K     I+V  I    +++E ++ F+KYG V    + RD E  +SRGFGFV F + E   + + + N  +  G  + + +A+ K
Sbjct:  153 GNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKK 324          
BLAST of DR404964 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 44/174 (25.29%), Postives = 84/174 (48.28%), Query Frame = 1
Query:  154 GKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGSGQSKDFKTK----KIFVGGIPSSVSEDELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEIKKAEPK 657
            G +FI  L         +  F  +G+I    + +D + G  +G+GF+ Y      +  I+  +  ++N K+V +   I K   QSK  + K     +++  + S + +DE +  F K+G++    + RD E  +SRGFGFV F + E     + + N  ++   ++ + +A+ K
Sbjct:  142 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKK 313          
The following BLAST results are available for this feature:
BLAST of DR404964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
SXL_DROME7.686e-1427.78Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
PABP_COCIM7.686e-1427.01Polyadenylate-binding protein, cytoplasmic and nuc... [more]
SXL_DROSU1.311e-1327.22Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
ROC5_NICSY1.311e-1324.6133 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELAV4_XENTR2.236e-1325.14ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA2.236e-1325.14ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
PABP_SCHPO3.814e-1325.14Polyadenylate-binding protein, cytoplasmic and nuc... [more]
FCA_ARATH3.814e-1327.78Flowering time control protein FCA OS=Arabidopsis ... [more]
PABP_CHAGB6.507e-1328.16Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC8.498e-1325.29Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P08 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404964 ID=DR404964; Name=DR404964; organism=Citrus sinensis; type=EST; length=680bp
GGGGAACCCTGAATTNNNNNTCATCATATTTTCCCCCAAACATTTTCTCT
CCTTTAATCTCCTCCTTTCTCTAGAAAACTCTGTTAACACGACCAAGCTA
TGGGATCCAAATCGAAATCTGATAATCCTCACACCGGCGACGGCGCAAGC
CCCGGGAAGATTTTCATAGGTGGATTGCCTAAAGACACGACCTATGCTAC
GTTTAATAAGCATTTTGGAAAATATGGTGACATAACGGATTCGGTTATAA
TGAAAGATCGGTACACGGGGCAGCCTAGGGGTTTTGGCTTTATAACTTAT
GCCGATCCTTCTGTTGTAGACAAGGTTATTGAAGATACCCACATAATTAA
TGGAAAACAGGTTGAGATTAAAAGAACTATCCCAAAAGGCTCAGGTCAAT
CAAAGGACTTCAAGACAAAGAAGATATTTGTTGGTGGGATACCATCATCA
GTATCTGAAGATGAACTCAAGAATTTCTTCTCCAAATATGGGAAAGTTCT
GGAACACCAAATCATACGTGATCATGAAACTAACCGTTCTAGAGGTTTTG
GTTTTGTAATTTTTGATAGTGAAGAAGTTGTGGATGAAATGTTATCGAAG
GGAAATATGATTGATATGGCTGGTACCCAGGTGGAGATCAAGAAAGCTGA
ACCAAAGAAATCCTCGAACCCTCCACCTCC
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