DR404961

Overview
NameDR404961
Unique NameDR404961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.822e-26
Identity = 66/148 (44.59%), Postives = 84/148 (56.76%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVFS 757
            L N++D +YFG +SIG+P Q FTVIFDT SSNLWVPS  C  S                    G   +I YGTG+++G    D V V  L V  Q F E+ KE   TF+ A+FDGILGLG+  ++ G   PV+ NM+   LV  P+FS
Sbjct:   70 LINYLDMEYFGTISIGSPPQNFTVIFDTVSSNLWVPSVYCT-SPACQMHPQFRPSQSNTYSEVGTPFSIAYGTGSLTGIIGADQVSVQGLTVVGQQFGESVKEPGQTFVNAEFDGILGLGYPSLAAGGVTPVFDNMMAQNLVSLPMFS 216          
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.685e-26
Identity = 60/147 (40.82%), Postives = 85/147 (57.82%), Query Frame = 2
Query:  320 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVFSF 760
            +++DA YFGE+SIGTPSQ F V+FDTGSSNLWVPS  C  S                      + +++YG+G+++GFF  D   + ++ V NQ+F  +  E    FL A+FDGI+GL +  +S+G A P    M+  G +   VFSF
Sbjct:   67 DYLDAAYFGEISIGTPSQNFLVLFDTGSSNLWVPSVYCQ-SEACTTHNRFNPSKSSTFYTYDQTFSLEYGSGSLTGFFGYDTFTIQNIEVPNQEFGLSETEPGTNFLYAEFDGIMGLAYPSLSVGDATPALQGMVQDGTISSSVFSF 212          
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: PEPC_MACFU (Gastricsin (Fragment) OS=Macaca fuscata fuscata GN=PGC PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.210e-26
Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 2
Query:  323 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVFS 757
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GFF  D + V  + V NQ+F  +  E    F+ A+FDGI+GL +  +S+  A      M+  G +  P+FS
Sbjct:   57 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPTLSVDGATTAMQGMVQEGALTSPIFS 200          
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.072e-25
Identity = 79/202 (39.11%), Postives = 105/202 (51.98%), Query Frame = 2
Query:  161 LVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVA---LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVFS 757
            +V+I L KKK  + N +      K +E MRT   +YNL          +V+   L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S                      + +I YGTG+++G    D V+VG +   NQ F  +  E       A FDGILGL +  IS   A PV+ N+ D GLV + +FS
Sbjct:    3 VVKIPLVKKKSLRQNLIEN---GKLKEFMRT--HKYNLGSKYIREAATLVSEQPLQNYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSIYC-SSEACTNHNRFNPQDSSTYEATSETLSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWDQGLVSQDLFS 198          
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: PEPC_SORUN (Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.829e-25
Identity = 59/146 (40.41%), Postives = 86/146 (58.90%), Query Frame = 2
Query:  323 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVFSF 760
            ++DA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GFF  D + + ++ V +Q+F  +  E    F+ A+FDGI+G+ +  +++G A      ML  G +  PVFSF
Sbjct:   68 YLDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTGHARFNPSKSSTYSTNGQTFSLQYGSGSLTGFFGYDTMTLQNIKVPHQEFGLSQNEPGENFVYAQFDGIMGMAYPTLAMGGATTALQGMLQAGALDSPVFSF 212          
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: CHYM_CALJA (Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.829e-25
Identity = 79/212 (37.26%), Postives = 112/212 (52.83%), Query Frame = 2
Query:  134 AAFALPN-DGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVA---LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVFS 757
            A FAL    G+VRI L K K   + R +     KE   +   ++ +    S   S++  VA   L N++D QYFG++ IGTP Q FTV+FDTGSS+LWVPS  C  SV                     S +IQYGTG++ G    D V V  +V  +Q    +T+E    F  ++FDGILGL +  ++   ++PV+ NM+D  LV + +FS
Sbjct:    9 AVFALSQASGIVRIPLHKGK--SLRRAL-----KERGLLEDFLKNHQHAVSRKHSNSREVASEFLTNYLDCQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSVYCN-SVACQNHHRFDPSKSSTFQNMDKSLSIQYGTGSMQGLLGYDTVTVSSIVDPHQTVGLSTQEPGDVFTYSEFDGILGLAYPSLASEYSVPVFDNMMDRHLVAQDLFS 212          
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.389e-25
Identity = 75/215 (34.88%), Postives = 112/215 (52.09%), Query Frame = 2
Query:  116 FLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKE--EETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVF 754
            +++++     L    L+R+ LRK K  +   +  Q V K+  +     P ++Y+  G+ GD    +     +MDA YFGE+SIGTP Q F V+FDTGSSNLWV S  C  S                    G + ++QYGTG+++GFF  D + V  + V NQ+F  +  E    F+ A+FDGI+GL +  +S G A      ML  G + +P+F
Sbjct:    3 WMVVALLCLPLLEASLLRVPLRKMKSIR-ETMKEQGVLKDFLKTHKYDPGQKYHF-GNFGDYSV-LYEPMAYMDASYFGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHARFNPSKSSTYYTEGQTFSLQYGTGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPGLSSGGATTALQGMLGEGALSQPLF 213          
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.120e-25
Identity = 73/215 (33.95%), Postives = 112/215 (52.09%), Query Frame = 2
Query:  116 FLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKE--EETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVF 754
            +++++     L    L+R+ L+K K  +   +  Q V K+  +     P ++Y+  G  GD    +     +MDA Y+GE+SIGTP Q F V+FDTGSSNLWV S  C  S                    G + ++QYGTG+++GFF  D ++V  + V NQ+F  +  E    F+ A+FDGI+GL +  +S G A      ML  G + +P+F
Sbjct:    3 WMVVALLCLPLLEAALIRVPLKKMKSIR-ETMKEQGVLKDFLKNHKYDPGQKYHF-GKFGDYSV-LYEPMAYMDASYYGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHTRYNPSKSSTYYTQGQTFSLQYGTGSLTGFFGYDTLRVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAYPGLSSGGATTALQGMLGEGALSQPLF 213          
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.077e-25
Identity = 62/148 (41.89%), Postives = 82/148 (55.41%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVFS 757
            L N++D +YFG + IGTP+Q FTV+FDTGSSNLWVPS  CY S+                     + +I YGTG+++G    D VKVG +   NQ F  +  E       A FDGILGL +  IS   A PV+ N+ +  LV + +FS
Sbjct:   68 LENYLDVEYFGTIGIGTPAQNFTVVFDTGSSNLWVPSVYCY-SLACMDHNLFNPQDSSTYRATSKTVSITYGTGSMTGILGYDTVKVGGISDTNQIFGLSETEPGFFLYFAPFDGILGLAYPSISSSGATPVFDNIWNQRLVSQDLFS 214          
BLAST of DR404961 vs. ExPASy Swiss-Prot
Match: PEPA_CHICK (Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.185e-24
Identity = 65/148 (43.92%), Postives = 80/148 (54.05%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEISIGKAIPVWYNMLD*GLVKEPVFS 757
            + N+MDA Y+G +SIGTP Q F+VIFDTGSSNLWVPS  C  S                   N  +  I YGTG++SG    D V V  + V+NQ F  +  E    F    FDGILGL F  IS   A PV+ NM+   LV + +FS
Sbjct:   51 MTNYMDASYYGTISIGTPQQDFSVIFDTGSSNLWVPSIYCKSSACSNHKRFDPSKSSTYVSTN-ETVYIAYGTGSMSGILGYDTVAVSSIDVQNQIFGLSETEPGSFFYYCNFDGILGLAFPSISSSGATPVFDNMMSQHLVAQDLFS 197          
The following BLAST results are available for this feature:
BLAST of DR404961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
CATE_RABIT2.822e-2644.59Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
PEPC_RABIT3.685e-2640.82Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV... [more]
PEPC_MACFU8.210e-2641.38Gastricsin (Fragment) OS=Macaca fuscata fuscata GN... [more]
PEPA_BOVIN1.072e-2539.11Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]
PEPC_SORUN1.829e-2540.41Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1[more]
CHYM_CALJA1.829e-2537.26Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1[more]
PEPC_RAT2.389e-2534.88Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
PEPC_MOUSE3.120e-2533.95Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
PEPA4_MACFU9.077e-2541.89Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPA_CHICK1.185e-2443.92Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P05 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404961 ID=DR404961; Name=DR404961; organism=Citrus sinensis; type=EST; length=762bp
GGGGGATTTCTCGGTCTCGTCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGGCTTGGATTTCAAGAGATCTCAATTGGAAAAGCC
ATTCCAGTCTGGTATAATATGCTTGATTAAGGTCTCGTTAAAGAACCAGT
TTTTTCATTTTG
back to top