DR404960

Overview
NameDR404960
Unique NameDR404960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6928 contig Csv1_Contig6928:14..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.818e-28
Identity = 80/196 (40.82%), Postives = 102/196 (52.04%), Query Frame = 2
Query:  119 LILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETM-RTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKV-----------GDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L L+    A P   LVRI L K     I R + +     E+ + + PV +Y+              L N+MDAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C    +                 +NG S  I YG+G++SG+ SQD V V           G + V+ Q F EATK+  ITF+AAKFDGILG
Sbjct:    7 LPLALCLLAAPASALVRIPLHK--FTSIRRTMSEVGGSVEDLIAKGPVSKYSQAVPAVTEGPIPEVLKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCQSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILG 200          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.374e-28
Identity = 77/200 (38.50%), Postives = 111/200 (55.50%), Query Frame = 2
Query:  101 VALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTV-SKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNV---------KVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            V L +  +L+ ++FA+     +RI LRK     I R + +   S E+  ++ P+ +Y++  S   ++     L N++DAQY+G++ IGTP Q FTV+FDTGSSNLWVPS  C    +                 +NG S  I YG+G++SG+ SQD V         K   + V+ Q F EATK+  I F+AAKFDGILG
Sbjct:    6 VLLLILGLLASSSFAI-----IRIPLRK--FTSIRRTMTEVGGSVEDLILKGPITKYSMQSSPKTTEPVSELLKNYLDAQYYGDIGIGTPPQCFTVVFDTGSSNLWVPSIHCKILDIACWVHHKYNSDKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSDQSKARGIKVEKQIFGEATKQPGIVFVAAKFDGILG 198          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.907e-28
Identity = 69/148 (46.62%), Postives = 86/148 (58.11%), Query Frame = 2
Query:  227 SKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXX-RNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +  E   R P +  N   +L    T  + +++F DAQY+G ++IGTP Q F V+FDTGSSNLW+PS KC  +V                   NG    IQYG+GA+SGF SQD+V VG L VK+Q F EAT E  I F  AKFDGILG
Sbjct:   28 ASRESRRRVPQKWSNRLSALNAGTT--IPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGASSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGILG 173          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.539e-27
Identity = 77/194 (39.69%), Postives = 100/194 (51.55%), Query Frame = 2
Query:  119 LILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETM-RTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKV---------GDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L+L     A P   LVRI L K     + R + +     E+ + + P+ +Y               L N+MDAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C    +                 +NG S  I YG+G++SG+ SQD V V           + V+ Q F EATK+  ITF+AAKFDGILG
Sbjct:    7 LLLVLGLLAAPAAALVRIPLHK--FTSVRRTMTELGGPVEDLIAKGPISKYAQGAPAVTGGPIPEMLRNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTSFDIHYGSGSLSGYLSQDTVSVPCKSALSGLAGIKVERQTFGEATKQPGITFIAAKFDGILG 198          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 2
Query:  308 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            V + NFM+AQYF E++IGTP QTF V+ DTGSSNLWVPS++C  S+                 +NG S  I+YG+G++SGF SQD + +GD+ + +Q F EAT E  + F   +FDGILG
Sbjct:   75 VPITNFMNAQYFSEITIGTPPQTFKVVLDTGSSNLWVPSSQC-GSIACYLHNKYESSESSTYKKNGTSFKIEYGSGSLSGFVSQDRMTIGDITINDQLFAEATSEPGLAFAFGRFDGILG 193          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARP_ASPFU (Vacuolar protease A OS=Aspergillus fumigatus GN=pep2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27
Identity = 61/129 (47.29%), Postives = 78/129 (60.47%), Query Frame = 2
Query:  281 SLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            SL D     V ++NF++AQYF E+S+GTP Q F V+ DTGSSNLWVP + C  S+                  NG   AI+YG+G +SGF SQD +++GDL V  QDF EAT E  + F   +FDGILG
Sbjct:   66 SLNDMSRHDVLVDNFLNAQYFSEISLGTPPQKFKVVLDTGSSNLWVPGSDCS-SIACFLHNKYDSSASSTYKANGTEFAIKYGSGELSGFVSQDTLQIGDLKVVKQDFAEATNEPGLAFAFGRFDGILG 193          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARP_YEAST (Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.222e-26
Identity = 58/120 (48.33%), Postives = 75/120 (62.50%), Query Frame = 2
Query:  308 VALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            V L N+++AQY+ ++++GTP Q F VI DTGSSNLWVPS +C  S+                  NG   AIQYGTG++ G+ SQD + +GDL +  QDF EAT E  +TF   KFDGILG
Sbjct:   81 VPLTNYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG-SLACFLHSKYDHEASSSYKANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILG 199          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L+N++DAQY+G ++IGTP Q+F V+FDTGSSNLWVPS +C F ++                 +NG +  IQYG+G++SG+ S D V +G + V  Q F EA  E  + F+AAKFDGILG
Sbjct:   60 LSNYLDAQYYGAITIGTPPQSFKVVFDTGSSNLWVPSKECSFTNIACLMHNKYNAKKSSTFEKNGTAFHIQYGSGSLSGYLSTDTVGLGGVSVTKQTFAEAINEPGLVFVAAKFDGILG 178          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.103e-25
Identity = 63/129 (48.84%), Postives = 79/129 (61.24%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFF-SQDNVK---------VGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N+MDAQY+GE+ IGTP Q FTV+FDTGSSNLWVPS  C    +                 +NG + AI YG+G++SG+  SQD V          VG + V+ Q F EATK+  +TF+AAKFDGILG
Sbjct:    7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSGKSSTYVKNGTTFAIHYGSGSLSGYLSSQDTVSVPCNSALSGVGGIKVERQTFGEATKQPGLTFIAAKFDGILG 135          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.208e-25
Identity = 67/172 (38.95%), Postives = 88/172 (51.16%), Query Frame = 2
Query:  209 LVGQTVSKEEETMRTPVRRYNL------------------HGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKC-YFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L+G    +E + +R P++R +L                    S    +   V L+ FM+ QYFG + +GTP Q FTV+FDTGSSNLWVPS +C +FS+                  NG   AIQYGTG +SG  SQDN+ +G +      F EA  E S+ F  A FDGILG
Sbjct:   12 LLGNLEPEEAKLIRVPLQRIHLGHRILNPLNGWEQLAELSRTSTSGGNPSFVPLSKFMNTQYFGTIGLGTPPQNFTVVFDTGSSNLWVPSTRCHFFSLACWFHHRFNPKASSSFRPNGTKFAIQYGTGRLSGILSQDNLTIGGIHDAFVTFGEALWEPSLIFALAHFDGILG 183          
The following BLAST results are available for this feature:
BLAST of DR404960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
CATD_HUMAN1.818e-2840.82Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_MOUSE2.374e-2838.50Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
CATD_DICDI6.907e-2846.62Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
CATD_CANFA1.539e-2739.69Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CARP_NEUCR5.847e-2748.33Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
CARP_ASPFU5.847e-2747.29Vacuolar protease A OS=Aspergillus fumigatus GN=pe... [more]
CARP_YEAST2.222e-2648.33Saccharopepsin OS=Saccharomyces cerevisiae GN=PEP4... [more]
ASPP_AEDAE4.950e-2647.90Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_PIG1.103e-2548.84Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
NAPSA_MOUSE3.208e-2538.95Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404960 ID=DR404960; Name=DR404960; organism=Citrus sinensis; type=EST; length=667bp
GGGGGATTTCTCGGNNNNNNCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGG
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