DR404960

Overview
NameDR404960
Unique NameDR404960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.320e-22
Identity = 60/126 (47.62%), Postives = 71/126 (56.35%), Query Frame = 2
Query:  290 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            DS + +VAL N  D  Y+GE+ IGTP Q FTVIFDTGSS LWVPS+K +                             Y +   S + SQD+V +GDLVVK QDFIEAT+EA   FL   FDGILG
Sbjct:    2 DSGSAVVALTNDRDTSYYGEIGIGTPPQKFTVIFDTGSSVLWVPSSKAHS---------------------------MYESSGSSTYKSQDSVTIGDLVVKEQDFIEATEEADNVFLNRLFDGILG 100          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 2
Query:  311 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +L N++DA+YFG +SIGTP Q FTVIFDTGSSNLWVPS  C  S+                     + +I YGTG+++G    D VKVG +   NQ F  +  E  +TFL A FDGILG
Sbjct:   66 SLENYLDAEYFGTISIGTPPQDFTVIFDTGSSNLWVPSTYC-SSLACALHKRFNPEDSSTYQGTSETLSITYGTGSMTGILGYDTVKVGSIEDTNQIFGLSKTEPGLTFLFAPFDGILG 183          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 57/118 (48.31%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG +SIGTP Q FTVIFDTGSSNLWVPS  C  S                    G   +IQYGTG+++G    D V V  L V  Q F E+ KE   TF+ A+FDGILG
Sbjct:   71 LINYLDMEYFGTISIGTPPQNFTVIFDTGSSNLWVPSVYC-TSPACKAHPVFHPSQSDTYTEVGNHFSIQYGTGSLTGIIGADQVSVEGLTVDGQQFGESVKEPGQTFVNAEFDGILG 187          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_CALJA (Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  320 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            ++MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GFF  D + V  + V NQ+F  +  E    F+ A+FDGI+G
Sbjct:   67 DYMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSASSTYSSNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMG 181          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_MACFU (Gastricsin (Fragment) OS=Macaca fuscata fuscata GN=PGC PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 2
Query:  323 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GFF  D + V  + V NQ+F  +  E    F+ A+FDGI+G
Sbjct:   57 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMG 170          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_HUMAN (Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 2
Query:  323 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GFF  D + V  + V NQ+F  +  E    F+ A+FDGI+G
Sbjct:   68 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTSHSRFNPSESSTYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMG 181          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 56/118 (47.46%), Postives = 69/118 (58.47%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG +SIG+P Q FTVIFDTGSSNLWVPS  C  S                    G S +IQYGTG+++G    D V V  L V  Q F E+ +E   TF+ A+FDGILG
Sbjct:   66 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYC-TSPACQTHPVFHPSLSSTYREVGNSFSIQYGTGSLTGIIGADQVSVEGLTVVGQQFGESVQEPGKTFVHAEFDGILG 182          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_SUNMU (Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.811e-21
Identity = 51/115 (44.35%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  323 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GFF  D + V ++ V +Q+F  +  E    F+ A+FDGI+G
Sbjct:   68 YMDASYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTGHARFNPNQSSTYSTNGQTFSLQYGSGSLTGFFGYDTMTVQNIKVPHQEFGLSQNEPGTNFIYAQFDGIMG 181          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_RHIFE (Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 2
Query:  323 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +MDA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  +                   NG + ++QYG+G+++GFF  D + V  + V NQ+F  +  E    F+ A+FDGI+G
Sbjct:   68 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-TQACTGHTRFNPSQSSTYSTNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMG 181          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 66/186 (35.48%), Postives = 98/186 (52.69%), Query Frame = 2
Query:  116 FLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKE--EETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +++++     L    L+R+ LRK K  +   +  Q V K+  +     P ++Y+  G+ GD    +     +MDA YFGE+SIGTP Q F V+FDTGSSNLWV S  C  S                    G + ++QYGTG+++GFF  D + V  + V NQ+F  +  E    F+ A+FDGI+G
Sbjct:    3 WMVVALLCLPLLEASLLRVPLRKMKSIR-ETMKEQGVLKDFLKTHKYDPGQKYHF-GNFGDYSV-LYEPMAYMDASYFGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHARFNPSKSSTYYTEGQTFSLQYGTGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMG 184          
The following BLAST results are available for this feature:
BLAST of DR404960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
CARDF_CYNCA3.320e-2247.62Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PEPA4_RABIT5.663e-2247.06Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CATE_MOUSE5.663e-2248.31Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]
PEPC_CALJA1.262e-2144.83Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1[more]
PEPC_MACFU1.648e-2145.22Gastricsin (Fragment) OS=Macaca fuscata fuscata GN... [more]
PEPC_HUMAN1.648e-2145.22Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1[more]
CATE_CAVPO1.648e-2147.46Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1[more]
PEPC_SUNMU2.811e-2144.35Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2[more]
PEPC_RHIFE3.671e-2144.35Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=... [more]
PEPC_RAT3.671e-2135.48Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404960 ID=DR404960; Name=DR404960; organism=Citrus sinensis; type=EST; length=667bp
GGGGGATTTCTCGGNNNNNNCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGG
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