DR404960

Overview
NameDR404960
Unique NameDR404960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.794e-21
Identity = 64/186 (34.41%), Postives = 98/186 (52.69%), Query Frame = 2
Query:  116 FLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKE--EETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +++++     L    L+R+ L+K K  +   +  Q V K+  +     P ++Y+  G  GD    +     +MDA Y+GE+SIGTP Q F V+FDTGSSNLWV S  C  S                    G + ++QYGTG+++GFF  D ++V  + V NQ+F  +  E    F+ A+FDGI+G
Sbjct:    3 WMVVALLCLPLLEAALIRVPLKKMKSIR-ETMKEQGVLKDFLKNHKYDPGQKYHF-GKFGDYSV-LYEPMAYMDASYYGEISIGTPPQNFLVLFDTGSSNLWVSSVYCQ-SEACTTHTRYNPSKSSTYYTQGQTFSLQYGTGSLTGFFGYDTLRVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMG 184          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.068e-20
Identity = 69/190 (36.32%), Postives = 94/190 (49.47%), Query Frame = 2
Query:  113 LFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYF-SVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGD----LVVKNQDFIEATKEASITFLAAKFDGILG 667
            +FL+L+  A A     + RI L K+   +     G        +++  ++   + G + + D     L+++ +AQY+G V+IGTP Q F V+FDTGSSNLWVP A C F  +                   GAS  IQYGTG++ G    D V  G        KNQ    AT E  ITF+AAKFDGI G
Sbjct:    5 VFLLLALVALA---SAIQRIKLEKRTYTREQYKFG--------SIQEHLKAKYVPGYIPNKDAFNEGLSDYSNAQYYGPVTIGTPPQNFQVLFDTGSSNLWVPCANCPFGDIACRMHNRFDCKKSSSCTATGASFEIQYGTGSMKGTVDNDVVCFGHDTTYCTDKNQGLACATSEPGITFVAAKFDGIFG 183          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.108e-20
Identity = 57/123 (46.34%), Postives = 70/123 (56.91%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNV-----KVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG +SIG+P Q FTVIFDTGSSNLWVPS  C  S                  + G S +IQYGTG++SG    D V     +V  L V  Q F E+  E   TF+ A+FDGILG
Sbjct:   70 LINYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYC-TSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGSLSGIIGADQVSAFATQVEGLTVVGQQFGESVTEPGQTFVDAEFDGILG 191          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_SORUN (Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.059e-20
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  323 FMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            ++DA YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                   NG + ++QYG+G+++GFF  D + + ++ V +Q+F  +  E    F+ A+FDGI+G
Sbjct:   68 YLDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ-SQACTGHARFNPSKSSTYSTNGQTFSLQYGSGSLTGFFGYDTMTLQNIKVPHQEFGLSQNEPGENFVYAQFDGIMG 181          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.301e-20
Identity = 51/118 (43.22%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG + IGTP+Q FTV+FDTGSSNLWVPS  CY S+                     + +I YGTG+++G    D VKVG +   NQ F  +  E       A FDGILG
Sbjct:   68 LENYLDVEYFGTIGIGTPAQNFTVVFDTGSSNLWVPSVYCY-SLACMDHNLFNPQDSSTYRATSKTVSITYGTGSMTGILGYDTVKVGGISDTNQIFGLSETEPGFFLYFAPFDGILG 184          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CHYM_CALJA (Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.301e-20
Identity = 69/182 (37.91%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  134 AAFALPN-DGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVA---LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            A FAL    G+VRI L K K   + R +     KE   +   ++ +    S   S++  VA   L N++D QYFG++ IGTP Q FTV+FDTGSS+LWVPS  C  SV                     S +IQYGTG++ G    D V V  +V  +Q    +T+E    F  ++FDGILG
Sbjct:    9 AVFALSQASGIVRIPLHKGK--SLRRAL-----KERGLLEDFLKNHQHAVSRKHSNSREVASEFLTNYLDCQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSVYCN-SVACQNHHRFDPSKSSTFQNMDKSLSIQYGTGSMQGLLGYDTVTVSSIVDPHQTVGLSTQEPGDVFTYSEFDGILG 182          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA3_RABIT (Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 53/118 (44.92%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S                      S +I YGTG+++GF   D VKVG++   NQ F  +  E       A FDGILG
Sbjct:   67 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSAACSVHNQFNPEDSSTFQATSESLSITYGTGSMTGFLGYDTVKVGNIEDTNQIFGLSESEPGSFLYYAPFDGILG 183          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 54/118 (45.76%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG +SIG+P Q FTVIFDT SSNLWVPS  C  S                    G   +I YGTG+++G    D V V  L V  Q F E+ KE   TF+ A+FDGILG
Sbjct:   70 LINYLDMEYFGTISIGSPPQNFTVIFDTVSSNLWVPSVYC-TSPACQMHPQFRPSQSNTYSEVGTPFSIAYGTGSLTGIIGADQVSVQGLTVVGQQFGESVKEPGQTFVNAEFDGILG 186          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  320 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +++DA YFGE+SIGTPSQ F V+FDTGSSNLWVPS  C  S                      + +++YG+G+++GFF  D   + ++ V NQ+F  +  E    FL A+FDGI+G
Sbjct:   67 DYLDAAYFGEISIGTPSQNFLVLFDTGSSNLWVPSVYCQ-SEACTTHNRFNPSKSSTFYTYDQTFSLEYGSGSLTGFFGYDTFTIQNIEVPNQEFGLSETEPGTNFLYAEFDGIMG 181          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19
Identity = 66/172 (38.37%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  161 LVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVA---LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +V+I L KKK  + N +      K +E MRT   +YNL          +V+   L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S                      + +I YGTG+++G    D V+VG +   NQ F  +  E       A FDGILG
Sbjct:    3 VVKIPLVKKKSLRQNLIEN---GKLKEFMRT--HKYNLGSKYIREAATLVSEQPLQNYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSIYC-SSEACTNHNRFNPQDSSTYEATSETLSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILG 168          
The following BLAST results are available for this feature:
BLAST of DR404960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
PEPC_MOUSE4.794e-2134.41Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
ASP3_CAEEL1.068e-2036.32Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
CATE_HUMAN3.108e-2046.34Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
PEPC_SORUN4.059e-2042.61Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1[more]
PEPA4_MACFU5.301e-2043.22Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
CHYM_CALJA5.301e-2037.91Chymosin OS=Callithrix jacchus GN=CYM PE=1 SV=1[more]
PEPA3_RABIT6.923e-2044.92Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CATE_RABIT6.923e-2045.76Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
PEPC_RABIT9.042e-2042.24Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV... [more]
PEPA_BOVIN2.014e-1938.37Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404960 ID=DR404960; Name=DR404960; organism=Citrus sinensis; type=EST; length=667bp
GGGGGATTTCTCGGNNNNNNCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGG
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