DR404960

Overview
NameDR404960
Unique NameDR404960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_CAVPO (Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  320 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            ++MDA YFG++S+GTP Q+F V+FDTGSSNLWVPS  C  S+                     S +++YGTG+++G F  D + + D+ V  Q+F  +  E    F+ A+FDGILG
Sbjct:   73 SYMDAAYFGQISLGTPPQSFQVLFDTGSSNLWVPSVYC-SSLACTTHTRFNPRDSSTYVATDQSFSLEYGTGSLTGVFGYDTMTIQDIQVPKQEFGLSETEPGSDFVYAEFDGILG 187          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPE_CHICK (Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 71/189 (37.57%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  119 LILSPAAFALPNDGLVRIGL-RKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVA-----LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L L  A  AL +DG+ R+ L R KKL +I R  G      +        RY++      +  D++      L N +D +Y+G +SIGTP Q FTV+FDTGSSNLWVPS  C  S                    G + +I YGTG + G    D V V  L+  NQ F  +T E    F+  KFDGILG
Sbjct:    4 LALLCAVLAL-SDGITRLPLERGKKLREILREKGLLHHFLQH------HRYDIGTKFPHAFPDVLTVVTEPLLNTLDMEYYGTISIGTPPQDFTVVFDTGSSNLWVPSVSC-TSPACQSHQMFNPSQSSTYKSTGQNLSIHYGTGDMEGTVGCDTVTVASLMDTNQLFGLSTSEPGQFFVYVKFDGILG 184          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_CHICK (Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19
Identity = 52/118 (44.07%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            + N+MDA Y+G +SIGTP Q F+VIFDTGSSNLWVPS  C  S                   N  +  I YGTG++SG    D V V  + V+NQ F  +  E    F    FDGILG
Sbjct:   51 MTNYMDASYYGTISIGTPQQDFSVIFDTGSSNLWVPSIYCKSSACSNHKRFDPSKSSTYVSTN-ETVYIAYGTGSMSGILGYDTVAVSSIDVQNQIFGLSETEPGSFFYYCNFDGILG 167          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PAG2_PIG (Pregnancy-associated glycoprotein 2 OS=Sus scrofa GN=PAG2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.705e-18
Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D  Y G +SIGTP Q F+V+FDTGSS+LWVPS  C                     R G S  ++YG+G +SGF  QD V++G L    Q F  + +E    F  A FDGILG
Sbjct:   68 LRNYLDMVYVGNISIGTPPQQFSVVFDTGSSDLWVPSIYCKSKACVTHRSFNPSHSSTFHDR-GKSIKLEYGSGKMSGFLGQDTVRIGQLTSTGQAFGLSKEETGKAFEHAIFDGILG 184          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 48/118 (40.68%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            + N++D+ YFGE+SIGTP Q F V+FDTGSSNLWVPS  C  S                    G +  + YG+G+++     D V V ++VV NQ+F  +  E +  F  + FDGILG
Sbjct:   67 ITNYLDSFYFGEISIGTPPQNFLVLFDTGSSNLWVPSTYCQ-SQACSNHNRFSPSQSSTFTNGGQTYTLSYGSGSLTVVLGYDTVTVQNIVVSNQEFGLSESEPTSPFYYSDFDGILG 183          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S+                     + +I YGTG+++G    D V+VG +   NQ F  +  E       A FDGILG
Sbjct:   68 LENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACTNHNLFNPQDSSTYQSTSGTLSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILG 184          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S+                     + +I YGTG+++G    D V+VG +   NQ F  +  E       A FDGILG
Sbjct:   68 LENYLDMEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACTNHNRFNPQDSSTYQSTSGTVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILG 184          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.909e-18
Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S+                     + +I YGTG+++G    D V+VG +   NQ F  +  E       A FDGILG
Sbjct:   68 LENYLDVEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACTNHNLFNPQDSSTYQSTSGTLSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILG 184          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_CANFA (Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.799e-18
Identity = 51/119 (42.86%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  311 ALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +L N+MD +YFG + IGTP Q FTVIFDTGSSNLWVPS  C                      N    +I YGTG+++G    D V+VG +   NQ F  +  E       A FDGILG
Sbjct:   65 SLKNYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYCSSPACSNHNRFNPQESSTYQGTN-RPVSIAYGTGSMTGILGYDTVQVGGIADTNQIFGLSETEPGSFLYYAPFDGILG 182          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 50/118 (42.37%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S+                       +I YGTG+++G    D V+VG +   NQ F  +  E       A FDGILG
Sbjct:   65 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYC-SSLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILG 181          
The following BLAST results are available for this feature:
BLAST of DR404960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
PEPC_CAVPO2.631e-1941.38Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1[more]
PEPE_CHICK4.487e-1937.57Embryonic pepsinogen OS=Gallus gallus PE=2 SV=1[more]
PEPA_CHICK7.654e-1944.07Pepsin A OS=Gallus gallus GN=PGA PE=1 SV=1[more]
PAG2_PIG1.705e-1842.37Pregnancy-associated glycoprotein 2 OS=Sus scrofa ... [more]
PEPC_MONDO2.909e-1840.68Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]
PEPA_MACMU2.909e-1842.37Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA2_MACFU2.909e-1842.37Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
PEPA1_MACFU2.909e-1842.37Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPA_CANFA3.799e-1842.86Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1[more]
PEPA_PIG4.961e-1842.37Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404960 ID=DR404960; Name=DR404960; organism=Citrus sinensis; type=EST; length=667bp
GGGGGATTTCTCGGNNNNNNCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGG
back to top