DR404960

Overview
NameDR404960
Unique NameDR404960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_HUMAN (Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.961e-18
Identity = 49/118 (41.53%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG + IGTP+Q FTV+FDTGSSNLWVPS  C  S+                     + +I YGTG+++G    D V+VG +   NQ F  +  E       A FDGILG
Sbjct:   68 LENYLDMEYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYC-SSLACTNHNRFNPEDSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILG 184          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.480e-18
Identity = 50/118 (42.37%), Postives = 61/118 (51.69%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N+MD +YFG + IGTP Q FTVIFDTGSSNLWVPS  C                      N    ++ YGTG+++G    D V+VG +   NQ F  +  E       A FDGILG
Sbjct:   66 LENYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYCSSPACSNHNRFNPQQSSTYQGTN-QKLSVAYGTGSMTGILGYDTVQVGGITDTNQIFGLSETEPGSFLYYAPFDGILG 182          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CHYM_SHEEP (Chymosin OS=Ovis aries GN=CYM PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.444e-17
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 2
Query:  287 GDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            G  +   V L N++D+QYFG++ +GTP Q FTV+FDTGSS+ WVPS  C  S                    G   +I+YGTG++ G    D V V ++V   Q    +T+E    F  A+FDGILG
Sbjct:   57 GFGEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSSTFQNLGKPLSIRYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILG 182          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CHYM_BOVIN (Chymosin OS=Bos taurus GN=CYM PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.885e-17
Identity = 50/127 (39.37%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  287 GDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            G  +   V L N++D+QYFG++ +GTP Q FTV+FDTGSS+ WVPS  C  S                    G   +I YGTG++ G    D V V ++V   Q    +T+E    F  A+FDGILG
Sbjct:   57 GFGEVASVPLTNYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK-SNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILG 182          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N++D +YFG + IGTP+Q FTVIFDTGSSNLWVPS  C  S                      + +I YGTG+++G    D V+VG +   NQ F  +  E       + FDGILG
Sbjct:   67 LVNYLDMEYFGTIGIGTPAQEFTVIFDTGSSNLWVPSIYC-SSPACTNHNRFNPQESSTYQATSQTLSIAYGTGSMTGILGYDTVQVGGIADTNQIFGLSETEPGSFLYYSPFDGILG 183          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PAG2_BOVIN (Pregnancy-associated glycoprotein 2 OS=Bos taurus GN=PAG2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.200e-17
Identity = 57/156 (36.54%), Postives = 75/156 (48.08%), Query Frame = 2
Query:  230 KEEETMRTPVRRYNLHG----------SLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            K+ +T+R  +R  NL            S  DS   I  L N++D  Y G ++IGTP Q F V+FDTGS+NLWVP   C  S                    G+   I YG+G I GF   D V++G+LV   Q F  + +E    F +  FDGILG
Sbjct:   22 KKMKTLRETLREKNLLNNFLEEQAYRLSKNDSKITIHPLRNYLDTAYVGNITIGTPPQEFRVVFDTGSANLWVPCITC-TSPACYTHKTFNPQNSSSFREVGSPITIFYGSGIIQGFLGSDTVRIGNLVSPEQSFGLSLEEYG--FDSLPFDGILG 174          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_SORUN (Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N+MD +YFG +SIGTP Q FTVIFDTGSSNLWVPS  C  S                      + +I YGTG+++G    D V+V  +   NQ F  +  E       + FDGILG
Sbjct:   67 LVNYMDMEYFGTISIGTPPQEFTVIFDTGSSNLWVPSIYC-SSPACSNHNRFDPQKSSTFKPTSQTVSIAYGTGSMTGVLGYDTVQVAGIADTNQIFGLSQSEPGSFLYYSPFDGILG 183          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PAG_HORSE (Pregnancy-associated glycoprotein OS=Equus caballus GN=PAG PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.164e-17
Identity = 49/126 (38.89%), Postives = 64/126 (50.79%), Query Frame = 2
Query:  290 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            DS      + N++D  Y G +S+GTP Q F VIFDTGS++LWVPS  C  S                   +G    + YGTG +SGF   D +K+  LV +NQ F  + +E       A FDGILG
Sbjct:   58 DSGVAFEPMRNYLDIAYMGIISVGTPPQEFQVIFDTGSADLWVPSIYC-SSPACSNHNTFNPLRSSTFVASGQPIKLIYGTGKMSGFVGYDTIKISSLVDRNQAFGLSVEEPDKILELATFDGILG 182          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.596e-16
Identity = 49/118 (41.53%), Postives = 61/118 (51.69%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N+MD +YFG + IGTP Q FTVIFDTGSSNLWVPS  C  S                      + +I YGTG+++G    D V+V  +   NQ F  +  E       + FDGILG
Sbjct:   67 LVNYMDMEYFGTIGIGTPPQEFTVIFDTGSSNLWVPSVYC-SSPACSNHNRFNPQKSSTFQSTSQTLSIAYGTGSMTGVLGYDTVQVAGIADTNQIFGLSQTEPGSFLYYSPFDGILG 183          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.644e-16
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  320 NFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            N++D+ YFGE+SIGTP Q F ++FDTGSSNLWVPS  C  S                   +  +  + YG G+++     D V V ++V+ NQ F  +  E +  F  + FDGILG
Sbjct:   68 NYLDSYYFGEISIGTPPQNFLILFDTGSSNLWVPSTYCQ-SQACSNHNRFNPSRSSTYQSSEQTYTLAYGFGSLTVLLGYDTVTVQNIVIHNQLFGMSENEPNYPFYYSYFDGILG 182          
The following BLAST results are available for this feature:
BLAST of DR404960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
PEPA_HUMAN4.961e-1841.53Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1[more]
PEPA_RHIFE6.480e-1842.37Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
CHYM_SHEEP1.444e-1739.37Chymosin OS=Ovis aries GN=CYM PE=2 SV=1[more]
CHYM_BOVIN1.885e-1739.37Chymosin OS=Bos taurus GN=CYM PE=1 SV=3[more]
PEPA_CALJA4.200e-1741.53Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PAG2_BOVIN4.200e-1736.54Pregnancy-associated glycoprotein 2 OS=Bos taurus ... [more]
PEPA_SORUN5.485e-1742.37Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1[more]
PAG_HORSE7.164e-1738.89Pregnancy-associated glycoprotein OS=Equus caballu... [more]
PEPA_SUNMU1.596e-1641.53Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
PEPB_CANFA4.644e-1638.79Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404960 ID=DR404960; Name=DR404960; organism=Citrus sinensis; type=EST; length=667bp
GGGGGATTTCTCGGNNNNNNCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGG
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