DR404960

Overview
NameDR404960
Unique NameDR404960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEP2B_GADMO (Pepsin-2B OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 47/118 (39.83%), Postives = 60/118 (50.85%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            + N  D +Y+G +SIGTP ++F VIFDTGSSNLWV S+ C  +                    G +  + YGTG + G   QD V VG     NQ+  E+  E      AA FDGILG
Sbjct:    6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHC-SAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILG 122          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 53/126 (42.06%), Postives = 61/126 (48.41%), Query Frame = 2
Query:  290 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            DS + +VAL N  D  YFGE+ IGTP Q FTVIFDTGSS LWVPS+K +                                   S + S D+        K QDFIEAT+EA   FL   FDGILG
Sbjct:    1 DSGSTVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSYLWVPSSKAH-----------------------------------SMYESSDS-----STYKEQDFIEATEEADNVFLNRLFDGILG 86          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PLM1_PLAFA (Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 58/210 (27.62%), Postives = 98/210 (46.67%), Query Frame = 2
Query:  107 LFLFLILSPAAFALPNDGLVRIGLRKKKLDQINR-----LVGQTVSKEEETMRTPVRRYNLHGSLGDS----------------DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAAKFDGILG 667
            +F FL+++ A F    D +  +  + KK+++I       ++G ++    + +   V+++ L   + +S                  D V LN+  +  Y+GE  IG   Q F  IFDTGS+NLWVPSA+C  ++                 ++G    + Y +G +SGFFS+D V + +L    + FIE T        +   +FDGI+G
Sbjct:   43 VFFFLLITGALFYYLIDNV--LFPKNKKINEIMNTSKHVIIGFSIENSHDRIMKTVKQHRLKNYIKESLKFFKTGLTQKPHLGNAGDSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVG 248          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PLM1_PLAF7 (Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0076 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 58/210 (27.62%), Postives = 98/210 (46.67%), Query Frame = 2
Query:  107 LFLFLILSPAAFALPNDGLVRIGLRKKKLDQINR-----LVGQTVSKEEETMRTPVRRYNLHGSLGDS----------------DTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASI--TFLAAKFDGILG 667
            +F FL+++ A F    D +  +  + KK+++I       ++G ++    + +   V+++ L   + +S                  D V LN+  +  Y+GE  IG   Q F  IFDTGS+NLWVPSA+C  ++                 ++G    + Y +G +SGFFS+D V + +L    + FIE T        +   +FDGI+G
Sbjct:   43 VFFFLLITGALFYYLIDNV--LFPKNKKINEIMNTSKHVIIGFSIENSHDRIMKTVKQHRLKNYIKESLKFFKTGLTQKPHLGNAGDSVTLNDVANVMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCN-TIGCKTKNLYDSNKSKTYEKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVG 248          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PEPAF_RABIT (Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 50/134 (37.31%), Postives = 64/134 (47.76%), Query Frame = 2
Query:  266 YNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            Y L     D D     L N++D  Y G +SIGTP Q F V+ DTGS++LWVPS  C  S                   +G    I YG+G +SGF + D V++  LV   Q F  + +E       A FDGILG
Sbjct:   50 YKLLSGQQDPDVSFEPLRNYLDLAYIGIISIGTPPQEFKVVLDTGSADLWVPSIYC-SSPACGKHNTFNPLLSSTFLVSGRPINIVYGSGRMSGFLAYDTVQIAGLVDVAQAFGLSLQEPGKFMEYAVFDGILG 182          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PLM2_PLAFA (Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 2
Query:  293 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEA--TKEASITFLAAKFDGILG 667
            S  D + L +F +  ++G+  +G   Q FT I DTGS+NLWVPS KC  +                  ++G    + Y +G +SGFFS+D V VG+L +  + FIE   T     T+ A+ FDGILG
Sbjct:  125 SSNDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKC-TTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 249          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.328e-14
Identity = 52/126 (41.27%), Postives = 58/126 (46.03%), Query Frame = 2
Query:  290 DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            DS + +VAL N  D  YFGE+ IGTP Q FTVIFDTGSS LWVPS+K +                                   S + S      G    K QDFIEAT E    FL   FDGILG
Sbjct:    1 DSGSAVVALTNDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKAH-----------------------------------SMYESS-----GSSTYKEQDFIEATDETDNVFLHRLFDGILG 86          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PAG1_PIG (Pregnancy-associated glycoprotein 1 OS=Sus scrofa GN=PAG1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 45/137 (32.85%), Postives = 67/137 (48.91%), Query Frame = 2
Query:  257 VRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            ++++ L GSL       + L N++D  Y G ++IGTP Q F+VIFDT SS+LWVPS +C+                     N  +  +   +G +SG    D V++G    +NQ F  +  E       A FDG+LG
Sbjct:   49 IQKFGLKGSLCSPKISCLRLWNYLDMVYVGNITIGTPPQLFSVIFDTASSDLWVPSNQCHSRACVTHRSFNPTLSSTFQSSN-RTVKLAPHSGLVSGLLGYDTVQIGRFKSENQAFGLSQSEPVKELENAFFDGVLG 184          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARP_RHICH (Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 58/204 (28.43%), Postives = 94/204 (46.08%), Query Frame = 2
Query:   83 KFTAIRVALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLH-------GSLGDSDTDIVALNNF-MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            KFT I   + +   L+ A  A P +  + I L K                 +  ++  + +YN H       G + D+    V + ++  D +Y+G+V+IGTP + F + FDTGSS+LW+ S  C  +                   +G + +I YG G + SG  ++DNV +G L++K Q  IE  K  + +F     DG+LG
Sbjct:    2 KFTLISSCIAI-AALAVAVDAAPGEKKISIPLAKNP---------NYKPSAKNAIQKAIAKYNKHKINTSTGGIVPDAGVGTVPMTDYGNDVEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLC--TNCGSRQTKYDPKQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQT-IELAKREAASFANGPNDGLLG 192          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: ASP6_CAEEL (Aspartic protease 6 OS=Caenorhabditis elegans GN=asp-6 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 47/123 (38.21%), Postives = 59/123 (47.97%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVG-----DLVVKNQDFIEATKEASITFLAAKFDGILG 667
            +N+F D +Y G ++IGTP Q F V+ DTGSSNLW+P   C                     +NG S  IQYG+G  +G   QD V+ G      L V    F  A+K  S  F     DGILG
Sbjct:   63 VNDFGDFEYLGNITIGTPDQGFIVVLDTGSSNLWIPGPTC--KTNCKTKSKFDSTASSTFVKNGKSWTIQYGSGDAAGILGQDTVRFGAKGDSQLSVPTTTFGIASK-ISADFKNDATDGILG 182          
The following BLAST results are available for this feature:
BLAST of DR404960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
PEP2B_GADMO2.305e-1539.83Pepsin-2B OS=Gadus morhua PE=1 SV=1[more]
CARDG_CYNCA3.010e-1542.06Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PLM1_PLAFA3.931e-1527.62Plasmepsin-1 OS=Plasmodium falciparum PE=1 SV=2[more]
PLM1_PLAF73.931e-1527.62Plasmepsin-1 OS=Plasmodium falciparum (isolate 3D7... [more]
PEPAF_RABIT8.758e-1537.31Pepsin F OS=Oryctolagus cuniculus PE=2 SV=1[more]
PLM2_PLAFA1.144e-1437.01Plasmepsin-2 OS=Plasmodium falciparum PE=1 SV=1[more]
CARDH_CYNCA3.328e-1441.27Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]
PAG1_PIG7.414e-1432.85Pregnancy-associated glycoprotein 1 OS=Sus scrofa ... [more]
CARP_RHICH3.679e-1328.43Rhizopuspepsin OS=Rhizopus chinensis PE=1 SV=2[more]
ASP6_CAEEL6.276e-1338.21Aspartic protease 6 OS=Caenorhabditis elegans GN=a... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404960 ID=DR404960; Name=DR404960; organism=Citrus sinensis; type=EST; length=667bp
GGGGGATTTCTCGGNNNNNNCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGG
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