DR404960

Overview
NameDR404960
Unique NameDR404960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PAG1_SHEEP (Pregnancy-associated glycoprotein 1 OS=Ovis aries GN=PAG1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.826e-12
Identity = 47/127 (37.01%), Postives = 62/127 (48.82%), Query Frame = 2
Query:  293 SDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSV--XXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            S+  I  L N MD  Y G ++IGTP Q F V+FDTGSS+L VPS  C                           +  I +G+G + GF + D V++GDLV  +Q F     E   ++L   FDGILG
Sbjct:   56 SNLTIHPLRNIMDMLYVGNITIGTPPQEFQVVFDTGSSDLLVPSINCLSPTKRPCSKQDKFKHHQSSTFRFTNDTFRIYFGSGTMRGFVAHDTVRIGDLVSTDQPFGLIFLE---SWLDIPFDGILG 179          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARP3_RHINI (Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 59/203 (29.06%), Postives = 96/203 (47.29%), Query Frame = 2
Query:   83 KFTAIRVALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTD-------IVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            KFT I   + L L ++ +  A P+   V I L K K  + N          +  ++  + +Y+ H S+  S++        +   + + D +Y+GEV++GTP  T  + FDTGSS+LW  S+ C  +                  R+G + +I YG G + SG    D V +G L +++Q    A +EAS  F +   DG+LG
Sbjct:    2 KFTLISSCVTLAL-MTLSIEAAPSGKKVNIPLTKNKDYKPNA---------KNAIQKAIAKYHRHRSVSSSNSTSTDGIGYVPVTDYYNDIEYYGEVTVGTPGVTLKLDFDTGSSDLWFASSLC--TNCGSSQTKYNPNESSTYARDGRTWSISYGDGSSASGILGTDTVILGGLTIRHQTIELARREAS-QFQSGPSDGLLG 191          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: PAG1_BOVIN (Pregnancy-associated glycoprotein 1 OS=Bos taurus GN=PAG1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.019e-11
Identity = 42/118 (35.59%), Postives = 57/118 (48.31%), Query Frame = 2
Query:  314 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            L N  D  Y G ++IGTP Q F V+FDT SS+LWVPS  C                      N  +  I YG+G + G    D V++G+LV  +Q F  + +E    F    +DG+LG
Sbjct:   63 LRNIKDLVYMGNITIGTPPQEFQVVFDTASSDLWVPSDFCTSPACSTHVRFRHLQSSTFRLTN-KTFRITYGSGRMKGVVVHDTVRIGNLVSTDQPFGLSIEEYG--FEGRIYDGVLG 177          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARP5_RHINI (Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 60/206 (29.13%), Postives = 93/206 (45.15%), Query Frame = 2
Query:   83 KFTAIR--VALFLFLILSPAAFALPNDGLVRIGLRKKKLDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTD--------IVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            KF+ I   VAL + ++ + AA   PN   V I L K K  + N          +  ++  + +Y+ H S   S           +   + + D +YFG+V +GTP  T  + FDTGSS+LW  S+ C  +                  ++G + +I YG G + SG    D V +G L ++ Q    A +EAS +F     DG+LG
Sbjct:    2 KFSLISSCVALAVLVLSTEAA---PNGKKVNIPLTKNKDYKPNA---------KNAIQKVLAKYHRHRSTSSSSNSTSTDGIGRVPVTDYYNDIEYFGQVKVGTPGVTLKLDFDTGSSDLWFASSLC--TNCGYSQTKYNPNQSRTYAKDGRAWSISYGDGSSASGILGTDTVVLGGLTIQRQTIELARREAS-SFQNGPSDGLLG 192          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARP4_RHINI (Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.444e-11
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  278 GSLG-DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            GS G +S   +   ++  D +Y+GEV++GTP     + FDTGSS+LW  S  C  +                  ++G + +I YG G + SG   +D V +G L +KNQ  IE  K  + +F +   DG+LG
Sbjct:   69 GSAGTESSGSVPVTDDGNDIEYYGEVTVGTPGIKLKLDFDTGSSDLWFASTLC--TNCGSSQTKYDPSQSSTYAKDGRTWSISYGDGSSASGILGKDTVNLGGLKIKNQ-IIELAKREASSFSSGPSDGLLG 197          
BLAST of DR404960 vs. ExPASy Swiss-Prot
Match: CARP1_RHINI (Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 56/198 (28.28%), Postives = 86/198 (43.43%), Query Frame = 2
Query:   83 KFTAIRVALFLFLILSPAAFALPNDGLVRIGLRKKKL--DQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGASAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILG 667
            KFT I   + L   ++ A  A PN   + I L K           + + ++K         R+    G   ++   +  ++   D +Y+GEV++GTP     + FDTGSS++W  S  C  S                   +G + +I YG G + SG  + DNV +G L++K Q  IE  K  S  F     DG+LG
Sbjct:    2 KFTLISSCVAL-AAMTLAVEAAPNGKKINIPLAKNNSYKPSAKNALNKALAKYNR------RKVGSGGITTEASGSVPMVDYENDVEYYGEVTVGTPGIKLKLDFDTGSSDMWFASTLC--SSCSNSHTKYDPKKSSTYAADGRTWSISYGDGSSASGILATDNVNLGGLLIKKQT-IELAKRESSAFATDVIDGLLG 189          
The following BLAST results are available for this feature:
BLAST of DR404960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
PAG1_SHEEP1.826e-1237.01Pregnancy-associated glycoprotein 1 OS=Ovis aries ... [more]
CARP3_RHINI2.385e-1229.06Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1[more]
PAG1_BOVIN2.019e-1135.59Pregnancy-associated glycoprotein 1 OS=Bos taurus ... [more]
CARP5_RHINI3.444e-1129.13Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2[more]
CARP4_RHINI3.444e-1133.33Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1[more]
CARP1_RHINI4.498e-1128.28Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P04 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404960 ID=DR404960; Name=DR404960; organism=Citrus sinensis; type=EST; length=667bp
GGGGGATTTCTCGGNNNNNNCAGTCCACTTCTTTACTCTGTCTGTGCTCT
TTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATTCGG
GTTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCC
AAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGA
TCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGATGAGA
ACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGATAC
TGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGGAGG
TTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACAGGA
AGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTG
CTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGA
ATGGGGCATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGTTTC
TTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGA
TTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGT
TTGATGGTATACTTGGG
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