DR404958

Overview
NameDR404958
Unique NameDR404958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 3
Query:  522 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 722
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKN 218          
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 3
Query:  522 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 722
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKN 218          
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 3
Query:  522 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 722
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKN 67          
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 3
Query:  522 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 722
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKN 216          
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 3
Query:  522 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 722
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKN 216          
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.191e-29
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 3
Query:  501 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 722
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKN
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKN 75          
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.716e-22
Identity = 74/205 (36.10%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  114 VGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 722
            VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKN
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKN 194          
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 65/156 (41.67%), Postives = 82/156 (52.56%), Query Frame = 3
Query:  261 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 722
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKN
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKN 195          
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.519e-21
Identity = 66/173 (38.15%), Postives = 89/173 (51.45%), Query Frame = 3
Query:  228 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKN 722
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKN
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKN 225          
BLAST of DR404958 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.969e-20
Identity = 68/185 (36.76%), Postives = 91/185 (49.19%), Query Frame = 3
Query:  192 SKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKN 722
            S+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKN
Sbjct:   51 SRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKN 225          
The following BLAST results are available for this feature:
BLAST of DR404958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB2F_SOLLC4.504e-3195.52Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.504e-3195.52Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC4.504e-3195.52Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC4.504e-3195.52Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC4.504e-3195.52Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA7.191e-2984.00Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU1.716e-2236.10Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC3.236e-2141.67Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB12_SOLLC5.519e-2138.15Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY7.969e-2036.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239P01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404958 ID=DR404958; Name=DR404958; organism=Citrus sinensis; type=EST; length=722bp
GGGGAAAACCAACANNNNNTCTTGCTTACACAGCTTCNNNNGCTTACCCA
GCTTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCTCT
CTCCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATG
AGCTAAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGCGAGCAAGTCT
GTTTCTTCAGGTAGCCCGTGGTACGGCCCAGACAGAGTCAAGTACTTGGG
CCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCG
ACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCC
AAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGC
TCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCG
GTGAGGCCGTGTGGTTCAAGGCGGGAGCCCAGATCTTCAGCGAGGGCGGG
CTAGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGC
CATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAA
TTGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGC
AGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCT
CAAGGTTAAGGAAATCAAGAAT
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