DR404728

Overview
NameDR404728
Unique NameDR404728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP4 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapF PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.438e-43
Identity = 79/124 (63.71%), Postives = 94/124 (75.81%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F KY GLGNDFIL+DNRN   P +TPEQA  +CDR+FG+GADGVIF +P    TDYTMRIFNSDGSEPEMCGNG+RC ARF A+LE   L     + +HT AG I P+++ DG+V VDMG+P
Sbjct:    3 LQFTKYQGLGNDFILIDNRNEATPLLTPEQAVDICDRHFGVGADGVIFLLPATGETDYTMRIFNSDGSEPEMCGNGIRCLARFAADLEGHALTATPRYRIHTLAGTITPQVRSDGQVTVDMGQP 126          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ACAM1 (Diaminopimelate epimerase OS=Acaryochloris marina (strain MBIC 11017) GN=dapF PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.143e-42
Identity = 79/124 (63.71%), Postives = 95/124 (76.61%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELEN--LNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            + F KY GLGNDFIL+DNR+  +P +TP+QA ++CDRNFGIG DGVIFA+P    TDYTMRI+NSDGSEPEMCGNG+RC ARF+A LE   L    ++ +HT AG I P +Q DG VKVDMG P
Sbjct:    3 VEFTKYQGLGNDFILIDNRHQAQPCLTPDQAVQMCDRNFGIGGDGVIFALPPEGDTDYTMRIYNSDGSEPEMCGNGIRCLARFLAHLEGKPLQTDITYRIHTLAGTITPSLQADGLVKVDMGPP 126          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP8 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 8801) GN=dapF PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.031e-40
Identity = 80/124 (64.52%), Postives = 97/124 (78.23%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELE--NLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            + F KY GLGNDFIL+DNR+S  P ++PEQA K+CDR+FGIGADGVIF +PG   TDYTMRIFNSDGSEP+MCGNG+RC ARFIA LE     GK ++ + T AG+I P ++  G+VKVDMG P
Sbjct:    3 IEFSKYQGLGNDFILIDNRSSHTPLVSPEQAIKMCDRHFGIGADGVIFVLPGTANTDYTMRIFNSDGSEPQMCGNGIRCLARFIAHLEGGETLGK-TYQIDTLAGVISPRLEAQGQVKVDMGTP 125          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_MICAN (Diaminopimelate epimerase OS=Microcystis aeruginosa (strain NIES-843) GN=dapF PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.759e-40
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 2
Query:  341 FVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNG-KQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            F KY GLGNDFIL+DNR+S EP IT E A  +CDR+FGIGADGVIFA+PG   TDYTMRIFNSDGSEPEMCGNG+RC A+FIA LE  N   +++ +HT AG I+P ++ + +V VDMG P
Sbjct:    5 FTKYQGLGNDFILIDNRHSPEPLITAEMAVAMCDRHFGIGADGVIFALPGQAETDYTMRIFNSDGSEPEMCGNGIRCLAQFIARLEANNAIGRTYRIHTLAGTIIPRLEANEQVTVDMGPP 125          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_CYAP7 (Diaminopimelate epimerase OS=Cyanothece sp. (strain PCC 7424) GN=dapF PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.920e-40
Identity = 77/124 (62.10%), Postives = 96/124 (77.42%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLN--GKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            + F KYHGLGNDFIL+DNR+ +EP ++PE A ++CDR+FGIGADGVIF +PG + TDY MRIFNSDGSEPEMCGNG+RC A+FIAELE     GK S+ + T  GL+ P ++   +V VDMG P
Sbjct:    3 IEFTKYHGLGNDFILIDNRHGSEPMVSPEMAVEMCDRHFGIGADGVIFVLPGTSQTDYQMRIFNSDGSEPEMCGNGIRCLAQFIAELEKTTEVGK-SYRIDTLGGLMTPRLEAQEQVTVDMGLP 125          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SYNJA (Diaminopimelate epimerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dapF PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.151e-38
Identity = 73/122 (59.84%), Postives = 92/122 (75.41%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F KY GLGNDFILVDNR+  +P +TPE+A  LC+R FG+GADGVIF +PG  G D++MR+FNSDGSE EMCGNG+RC ARF+ +L       ++ +HT AG IVP+++ DG V VDMG P
Sbjct:    5 LSFHKYQGLGNDFILVDNRHQPQPCLTPEEAVALCNRRFGVGADGVIFLLPGQEGADFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGQDGAYQIHTLAGRIVPQVRPDGLVTVDMGIP 126          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SYNJB (Diaminopimelate epimerase OS=Synechococcus sp. GN=dapF PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.821e-37
Identity = 72/122 (59.02%), Postives = 92/122 (75.41%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F KY GLGNDFILVDNR  ++P ++PE+A  LC+R FG+GADGVIF +PG  G D++MR+FNSDGSE EMCGNG+RC ARF+ +L       ++ +HT AG IVP+++ DG V VDMG P
Sbjct:    5 LSFHKYQGLGNDFILVDNRWQSQPCLSPEEAVALCNRRFGVGADGVIFLLPGQEGADFSMRLFNSDGSEAEMCGNGIRCLARFLQDLGIPGRDGAYQIHTLAGRIVPQVRADGLVTVDMGIP 126          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_THEEB (Diaminopimelate epimerase OS=Thermosynechococcus elongatus (strain BP-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.476e-35
Identity = 70/124 (56.45%), Postives = 91/124 (73.39%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQ--SFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F KY GLGNDF+L+DNR+  E  +TPEQA   CDR+FG+GADGVIF + G   +DY MR++N+DGS  +MCGNG+RC A+FI  LE  +  +   + + T AGLIVPE+Q DG+V VDMG+P
Sbjct:    3 LSFQKYQGLGNDFLLIDNRHQEELLLTPEQAQFWCDRHFGVGADGVIFLLRGTGESDYRMRMYNADGSVAQMCGNGIRCLAKFIFALEGRSAGEIVRYRIDTLAGLIVPEVQADGQVTVDMGKP 126          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PROMM (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dapF PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.397e-29
Identity = 65/126 (51.59%), Postives = 86/126 (68.25%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNS--TEPRITPEQA--AKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F KY GLGNDF+L+D R    T+  I P+ A   K+CDR+FGIGADG+I A+P     D  M+IFN+DGS  EMCGNG+RC  RF+A++E     Q + + T AG+I P +Q+DG++ VDMG P
Sbjct:    5 LQFSKYQGLGNDFLLIDGREDQLTQQVINPDPAWVRKICDRHFGIGADGLILALPPRADGDLRMQIFNADGSLAEMCGNGIRCLTRFLADIEGDLCVQRWNIETLAGIICPVLQEDGQICVDMGTP 130          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_CARHZ (Diaminopimelate epimerase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dapF PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F+K HGLGNDF++VD   N+N     ++ + A K+CDR FGIGADG++  +P     D+ MRI NSDGSE EMCGN +RC AR+  E  N   K+   V T AG+I PE+ ++  V+VDMG PI
Sbjct:    1 MEFLKMHGLGNDFVVVDEIKNQNLVNKNLS-DLAKKICDRRFGIGADGLVLLLPSEKA-DFKMRIINSDGSEAEMCGNAIRCVARYYVEKYN-PAKKQLEVETLAGIIKPEVLENNMVRVDMGRPI 123          
The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
DAPF_CYAP48.438e-4363.71Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_ACAM17.143e-4263.71Diaminopimelate epimerase OS=Acaryochloris marina ... [more]
DAPF_CYAP81.031e-4064.52Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_MICAN1.759e-4065.29Diaminopimelate epimerase OS=Microcystis aeruginos... [more]
DAPF_CYAP73.920e-4062.10Diaminopimelate epimerase OS=Cyanothece sp. (strai... [more]
DAPF_SYNJA2.151e-3859.84Diaminopimelate epimerase OS=Synechococcus sp. (st... [more]
DAPF_SYNJB1.821e-3759.02Diaminopimelate epimerase OS=Synechococcus sp. GN=... [more]
DAPF_THEEB6.476e-3556.45Diaminopimelate epimerase OS=Thermosynechococcus e... [more]
DAPF_PROMM1.397e-2951.59Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_CARHZ6.491e-2749.21Diaminopimelate epimerase OS=Carboxydothermus hydr... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239E01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bp
GGGGAACGGCACTGTATCACACAAACTAAACCAACCACCGCATTTGACAT
TACCGCGACCAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGC
ATGGCCATAACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCG
CTCTGCCACTCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGT
TGACTCGACAATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGC
GTCTCGGCATCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCG
AACCTCTTTTCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGT
ACCATGGCCTCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACG
GAACCTAGGATAACTCCGGAGCAAGCGGCGAAGCTGTGTGATCGGAATTT
TGGCATTGGGGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCA
CTGATTATACAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATG
TGTGGCAATGGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAA
TTTAAATGGGAAGCAAAGTTTCACTGTCCACACTGGAGCTGGTCTCATTG
TTCCAGAAATTCAAGATGACGGGAAGGTCAAAGTGGATATGGGTGAACCA
ATA
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