DR404728

Overview
NameDR404728
Unique NameDR404728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_DESAP (Diaminopimelate epimerase OS=Desulforudis audaxviator (strain MP104C) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG---KVKVDMGEP 700
            + F K HGLGNDF++V+    + P      A ++CDR  G+GADG++  +P     D  MR+FN DGSEPEMCGN +RC A + A    L  K    V T AGLI PEI  DG    V+VDMG P
Sbjct:    1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPSA-AADLRMRVFNPDGSEPEMCGNAIRCVALY-ARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRVDMGRP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_DECAR (Diaminopimelate epimerase OS=Dechloromonas aromatica (strain RCB) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF+++D  R S    ++PEQ   L DR+FG+G D ++        G D+  RIFN+DG E E CGNG RCF RF+ + E L  K+   V T  G+I P ++ DG V VDMG P
Sbjct:    3 LKFSKMHGLGNDFVVLDGVRQSVS--LSPEQLCYLADRHFGVGCDQILLVEKASQPGIDFRYRIFNADGGEVEQCGNGARCFVRFVHD-EGLTDKREIRVETMRGIISPRLEGDGNVTVDMGIP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESH (Diaminopimelate epimerase OS=Shewanella sediminis (strain HAW-EB3) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            +HF K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  KQ   V T  G I   ++ DG V V+MG P+
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFVRN-KGLTNKQKIRVSTSNGKITLRLERDGNVTVNMGIPV 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEAM (Diaminopimelate epimerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 59/124 (47.58%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            +HF K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T AG +   ++ DG V V+MG PI
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKHKIKVSTSAGKMTLRLERDGGVTVNMGVPI 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_NITEU (Diaminopimelate epimerase OS=Nitrosomonas europaea GN=dapF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDFI++D  N +   + P    +  DR+FGIG D ++    PG +G D+  RIFN+DG E E CGNG RCFARF+ +  +L  K +  V T  G+I+P ++++G+V VDMG P
Sbjct:    3 LKFTKMHGLGNDFIVIDAINQSVS-LDPATIRRWADRHFGIGFDQLLVVEKPGESG-DFRYRIFNADGGEVEQCGNGARCFARFVRD-HDLTRKNTIRVETACGIIMPTVEENGEVSVDMGIP 122          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_BURTA (Diaminopimelate epimerase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            L F K HG GNDF+++D  +   P +T      L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L  K S  V    G+I   +QD+G+V VDMG P+
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTDKASVRVEVKHGVITLTMQDNGEVVVDMGAPV 125          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ALCBS (Diaminopimelate epimerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF+++D    + P     +  ++  +L DR FG+G D ++   P     D+  RI N+DGSE   CGNG RCFARF+ E + L  K+S  V T AG +   + DD ++ VDMG P
Sbjct:    3 LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQGDADFRYRILNADGSEVSQCGNGARCFARFVRE-QGLTDKKSIRVETAAGQMTLSVTDDDQITVDMGAP 127          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBY (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AYE) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF++VD   S    +      +L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T AG++ PE+  +G V+V+MG P
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBT (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dapF PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF++VD   S    +      +L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T AG++ PE+  +G V+V+MG P
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBS (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain SDF) GN=dapF PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23
Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF++VD   S    +      +L DR+FG+G D ++   P  V   D+  RIFN+DGSE E CGNGVRCFARF+ E  +L  K + TV T AG++ PE+  +G V+V+MG P
Sbjct:    3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYP 123          
The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
DAPF_DESAP8.773e-2447.20Diaminopimelate epimerase OS=Desulforudis audaxvia... [more]
DAPF_DECAR8.773e-2446.77Diaminopimelate epimerase OS=Dechloromonas aromati... [more]
DAPF_SHESH1.146e-2346.77Diaminopimelate epimerase OS=Shewanella sediminis ... [more]
DAPF_SHEAM1.146e-2347.58Diaminopimelate epimerase OS=Shewanella amazonensi... [more]
DAPF_NITEU1.146e-2346.34Diaminopimelate epimerase OS=Nitrosomonas europaea... [more]
DAPF_BURTA1.146e-2345.16Diaminopimelate epimerase OS=Burkholderia thailand... [more]
DAPF_ALCBS1.146e-2342.06Diaminopimelate epimerase OS=Alcanivorax borkumens... [more]
DAPF_ACIBY1.146e-2347.97Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIBT1.146e-2347.97Diaminopimelate epimerase OS=Acinetobacter baumann... [more]
DAPF_ACIBS1.146e-2347.97Diaminopimelate epimerase OS=Acinetobacter baumann... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239E01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bp
GGGGAACGGCACTGTATCACACAAACTAAACCAACCACCGCATTTGACAT
TACCGCGACCAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGC
ATGGCCATAACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCG
CTCTGCCACTCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGT
TGACTCGACAATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGC
GTCTCGGCATCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCG
AACCTCTTTTCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGT
ACCATGGCCTCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACG
GAACCTAGGATAACTCCGGAGCAAGCGGCGAAGCTGTGTGATCGGAATTT
TGGCATTGGGGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCA
CTGATTATACAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATG
TGTGGCAATGGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAA
TTTAAATGGGAAGCAAAGTTTCACTGTCCACACTGGAGCTGGTCTCATTG
TTCCAGAAATTCAAGATGACGGGAAGGTCAAAGTGGATATGGGTGAACCA
ATA
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