DR404728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_DESAP (Diaminopimelate epimerase OS=Desulforudis audaxviator (strain MP104C) GN=dapF PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24 Identity = 59/125 (47.20%), Postives = 74/125 (59.20%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG---KVKVDMGEP 700 + F K HGLGNDF++V+ + P A ++CDR G+GADG++ +P D MR+FN DGSEPEMCGN +RC A + A L K V T AGLI PEI DG V+VDMG P Sbjct: 1 MEFTKMHGLGNDFVIVNGFGQSLPDDPGALARRVCDRRLGVGADGLVLLLPSA-AADLRMRVFNPDGSEPEMCGNAIRCVALY-ARRRGLVAKTQLEVETLAGLIRPEILLDGDRETVRVDMGRP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_DECAR (Diaminopimelate epimerase OS=Dechloromonas aromatica (strain RCB) GN=dapF PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24 Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF+++D R S ++PEQ L DR+FG+G D ++ G D+ RIFN+DG E E CGNG RCF RF+ + E L K+ V T G+I P ++ DG V VDMG P Sbjct: 3 LKFSKMHGLGNDFVVLDGVRQSVS--LSPEQLCYLADRHFGVGCDQILLVEKASQPGIDFRYRIFNADGGEVEQCGNGARCFVRFVHD-EGLTDKREIRVETMRGIISPRLEGDGNVTVDMGIP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESH (Diaminopimelate epimerase OS=Shewanella sediminis (strain HAW-EB3) GN=dapF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 +HF K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L KQ V T G I ++ DG V V+MG P+ Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFVRN-KGLTNKQKIRVSTSNGKITLRLERDGNVTVNMGIPV 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEAM (Diaminopimelate epimerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dapF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 59/124 (47.58%), Postives = 75/124 (60.48%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 +HF K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DGSE E CGNG RCFARF+ + L K V T AG + ++ DG V V+MG PI Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKHKIKVSTSAGKMTLRLERDGGVTVNMGVPI 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_NITEU (Diaminopimelate epimerase OS=Nitrosomonas europaea GN=dapF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDFI++D N + + P + DR+FGIG D ++ PG +G D+ RIFN+DG E E CGNG RCFARF+ + +L K + V T G+I+P ++++G+V VDMG P Sbjct: 3 LKFTKMHGLGNDFIVIDAINQSVS-LDPATIRRWADRHFGIGFDQLLVVEKPGESG-DFRYRIFNADGGEVEQCGNGARCFARFVRD-HDLTRKNTIRVETACGIIMPTVEENGEVSVDMGIP 122
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_BURTA (Diaminopimelate epimerase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dapF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 L F K HG GNDF+++D + P +T L DR+FGIGAD ++ P V+G D+ RIFN DG E E CGNG RCF +F+ + L K S V G+I +QD+G+V VDMG P+ Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTDKASVRVEVKHGVITLTMQDNGEVVVDMGAPV 125
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ALCBS (Diaminopimelate epimerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=dapF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 53/126 (42.06%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF+++D + P + ++ +L DR FG+G D ++ P D+ RI N+DGSE CGNG RCFARF+ E + L K+S V T AG + + DD ++ VDMG P Sbjct: 3 LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQGDADFRYRILNADGSEVSQCGNGARCFARFVRE-QGLTDKKSIRVETAAGQMTLSVTDDDQITVDMGAP 127
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBY (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain AYE) GN=dapF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF++VD S + +L DR+FG+G D ++ P V D+ RIFN+DGSE E CGNGVRCFARF+ E +L K + TV T AG++ PE+ +G V+V+MG P Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBT (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dapF PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF++VD S + +L DR+FG+G D ++ P V D+ RIFN+DGSE E CGNGVRCFARF+ E +L K + TV T AG++ PE+ +G V+V+MG P Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_ACIBS (Diaminopimelate epimerase OS=Acinetobacter baumannii (strain SDF) GN=dapF PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.146e-23 Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF++VD S + +L DR+FG+G D ++ P V D+ RIFN+DGSE E CGNGVRCFARF+ E +L K + TV T AG++ PE+ +G V+V+MG P Sbjct: 3 LEFTKMHGLGNDFMVVD-LISQRAYLDTATIQRLADRHFGVGFDQLLIVEPPDVPEADFKYRIFNADGSEVEQCGNGVRCFARFVHE-RHLTNKTNITVQTKAGIVKPELGQNGWVRVNMGYP 123 The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 374
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bpback to top |