DR404728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPK (Diaminopimelate epimerase OS=Pseudomonas putida (strain KT2440) GN=dapF PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23 Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF+++D S I P+ A + DR+ G+G D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T +G+IV ++Q+DG+V VDMG P Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMGPP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_BURXL (Diaminopimelate epimerase OS=Burkholderia xenovorans (strain LB400) GN=dapF PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23 Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ P V G D+ RIFN DG E E CGNG RCF +F+ E L ++S V G I +Q++G+V VDMG P+ Sbjct: 3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRE-RGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGTPV 124
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSYIN (Diaminopimelate epimerase OS=Psychromonas ingrahamii (strain 37) GN=dapF PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23 Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF+++DN ++ + ++L DRNFGIG D ++ P + D+ RIFN+DGSE E CGNG RCFARF+ +++ L K+ V T G I +I+ DG + VDMG+PI Sbjct: 3 IQFSKMHGLGNDFMVIDNVTQNV-FLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFV-KMKGLTQKRIINVSTAKGKIQLKIEHDGNITVDMGKPI 124
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESW (Diaminopimelate epimerase OS=Shewanella sp. (strain W3-18-1) GN=dapF PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DGSE E CGNG RCFARF+ + L K V T +G + ++ DG V V+MG PI Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEPC (Diaminopimelate epimerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=dapF PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DGSE E CGNG RCFARF+ + L K V T +G + ++ DG V V+MG PI Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_RALPJ (Diaminopimelate epimerase OS=Ralstonia pickettii (strain 12J) GN=dapF PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 LHF K HG GNDF+++D T TPEQ A + DR+FG+GAD ++ D+ RIFN DG E E CGNG RCF +F+ + L K++ V G+ +QDDG+V VDMG P+ Sbjct: 3 LHFTKMHGAGNDFVVLDGIQ-TPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMGAPV 124
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSESM (Diaminopimelate epimerase OS=Pseudomonas syringae pv. tomato GN=dapF PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 58/123 (47.15%), Postives = 75/123 (60.98%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+ RIFNSDGSE E CGNG RCFARF+ + + L K+ V T G+I EI+ DG++ VDMG P Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELEIRSDGQISVDMGPP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA6 (Diaminopimelate epimerase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dapF PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF+++DN + E+ ++L DRNFGIG D ++ P + D+ RIFNSDGSE CGNG RCFARF+ +++ L + V T AG IV + DG++ V+MGEPI Sbjct: 3 VQFSKMHGLGNDFVVIDNVTQNV-FFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHYRIFNSDGSEVSQCGNGARCFARFV-KMKGLTNRNKIVVSTKAGRIVLYHERDGQITVNMGEPI 124
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIN (Diaminopimelate epimerase OS=Leptospira interrogans GN=dapF PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG-----KVKVDMGEPI 703 L F K G+GND++ +D+ + + R+TPEQ K+ DRNFGIG+DGVIF G D+ M ++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V VDMG+P+ Sbjct: 4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVDMGKPV 128
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIC (Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dapF PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG-----KVKVDMGEPI 703 L F K G+GND++ +D+ + + R+TPEQ K+ DRNFGIG+DGVIF G D+ M ++NSDGS EMCGNG+RC A++I + L ++ + TGAG++ +++ V VDMG+P+ Sbjct: 4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVDMGKPV 128 The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 374
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bpback to top |