DR404728

Overview
NameDR404728
Unique NameDR404728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPK (Diaminopimelate epimerase OS=Pseudomonas putida (strain KT2440) GN=dapF PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.354e-23
Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF+++D   S    I P+ A +  DR+ G+G D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+   V T +G+IV ++Q+DG+V VDMG P
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKSGIIVLDVQNDGQVSVDMGPP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_BURXL (Diaminopimelate epimerase OS=Burkholderia xenovorans (strain LB400) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            L F K HG GNDF+++D    T+P  +TP Q   L DR+FG+GAD ++    P V G D+  RIFN DG E E CGNG RCF +F+ E   L  ++S  V    G I   +Q++G+V VDMG P+
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRE-RGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGTPV 124          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSYIN (Diaminopimelate epimerase OS=Psychromonas ingrahamii (strain 37) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 56/124 (45.16%), Postives = 79/124 (63.71%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF+++DN       ++ +  ++L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+ +++ L  K+   V T  G I  +I+ DG + VDMG+PI
Sbjct:    3 IQFSKMHGLGNDFMVIDNVTQNV-FLSKDTISRLADRNFGIGFDQLLMIEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFV-KMKGLTQKRIINVSTAKGKIQLKIEHDGNITVDMGKPI 124          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESW (Diaminopimelate epimerase OS=Shewanella sp. (strain W3-18-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T +G +   ++ DG V V+MG PI
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEPC (Diaminopimelate epimerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T +G +   ++ DG V V+MG PI
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTNKNKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_RALPJ (Diaminopimelate epimerase OS=Ralstonia pickettii (strain 12J) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            LHF K HG GNDF+++D    T    TPEQ A + DR+FG+GAD ++          D+  RIFN DG E E CGNG RCF +F+ +   L  K++  V    G+    +QDDG+V VDMG P+
Sbjct:    3 LHFTKMHGAGNDFVVLDGIQ-TPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEHCGNGARCFVKFVTD-RGLTDKRTVRVEVMNGIATLTMQDDGQVTVDMGAPV 124          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSESM (Diaminopimelate epimerase OS=Pseudomonas syringae pv. tomato GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 58/123 (47.15%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF+++D   S    I P+ A +  DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T  G+I  EI+ DG++ VDMG P
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKGGIIELEIRSDGQISVDMGPP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA6 (Diaminopimelate epimerase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF+++DN        + E+ ++L DRNFGIG D ++   P  +   D+  RIFNSDGSE   CGNG RCFARF+ +++ L  +    V T AG IV   + DG++ V+MGEPI
Sbjct:    3 VQFSKMHGLGNDFVVIDNVTQNV-FFSKEKISQLADRNFGIGFDQLLVVEPPYDPEQDFHYRIFNSDGSEVSQCGNGARCFARFV-KMKGLTNRNKIVVSTKAGRIVLYHERDGQITVNMGEPI 124          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIN (Diaminopimelate epimerase OS=Leptospira interrogans GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG-----KVKVDMGEPI 703
            L F K  G+GND++ +D+  + + R+TPEQ  K+ DRNFGIG+DGVIF      G D+ M ++NSDGS  EMCGNG+RC A++I +   L   ++  + TGAG++  +++         V VDMG+P+
Sbjct:    4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVDMGKPV 128          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_LEPIC (Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dapF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 55/128 (42.97%), Postives = 82/128 (64.06%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDG-----KVKVDMGEPI 703
            L F K  G+GND++ +D+  + + R+TPEQ  K+ DRNFGIG+DGVIF      G D+ M ++NSDGS  EMCGNG+RC A++I +   L   ++  + TGAG++  +++         V VDMG+P+
Sbjct:    4 LKFTKMEGIGNDYVYIDSTRN-DIRLTPEQIQKISDRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYD-HGLTSSKNPKIETGAGILEVDLKIGSGNKVDLVSVDMGKPV 128          
The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
DAPF_PSEPK4.354e-2346.34Diaminopimelate epimerase OS=Pseudomonas putida (s... [more]
DAPF_BURXL5.686e-2345.60Diaminopimelate epimerase OS=Burkholderia xenovora... [more]
DAPF_PSYIN7.427e-2345.16Diaminopimelate epimerase OS=Psychromonas ingraham... [more]
DAPF_SHESW9.699e-2345.97Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHEPC9.699e-2345.97Diaminopimelate epimerase OS=Shewanella putrefacie... [more]
DAPF_RALPJ9.699e-2344.35Diaminopimelate epimerase OS=Ralstonia pickettii (... [more]
DAPF_PSESM9.699e-2347.15Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_PSEA69.699e-2345.97Diaminopimelate epimerase OS=Pseudoalteromonas atl... [more]
DAPF_LEPIN9.699e-2342.97Diaminopimelate epimerase OS=Leptospira interrogan... [more]
DAPF_LEPIC9.699e-2342.97Diaminopimelate epimerase OS=Leptospira interrogan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAA-PNP1239E01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bp
GGGGAACGGCACTGTATCACACAAACTAAACCAACCACCGCATTTGACAT
TACCGCGACCAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGC
ATGGCCATAACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCG
CTCTGCCACTCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGT
TGACTCGACAATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGC
GTCTCGGCATCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCG
AACCTCTTTTCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGT
ACCATGGCCTCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACG
GAACCTAGGATAACTCCGGAGCAAGCGGCGAAGCTGTGTGATCGGAATTT
TGGCATTGGGGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCA
CTGATTATACAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATG
TGTGGCAATGGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAA
TTTAAATGGGAAGCAAAGTTTCACTGTCCACACTGGAGCTGGTCTCATTG
TTCCAGAAATTCAAGATGACGGGAAGGTCAAAGTGGATATGGGTGAACCA
ATA
back to top