DR404728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_HERAR (Diaminopimelate epimerase OS=Herminiimonas arsenicoxydans GN=dapF PE=3 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23 Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HG GNDF+++D N + TP Q L DR FG+GAD ++ P G D+ RI+N+DG E E CGNG R F +F+ + + L KQ+ V T +G+I P ++ +G++ VDMG PI Sbjct: 3 IKFTKMHGAGNDFVVIDAINQSI-HFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNADGGEVEQCGNGARAFVKFVTD-KKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPI 124
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEDO (Diaminopimelate epimerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dapF PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22 Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 +HF K HGLGNDF++VD +PEQ +L +RNFG+G D ++ P + D+ RIFN+DGSE E CGNG RCFARF+ + L K V T +G + ++ DG V V+MG P+ Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKNKIRVSTSSGKMTLRLERDGSVVVNMGVPV 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_HAEPS (Diaminopimelate epimerase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dapF PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22 Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF+++D +T E K DR+ G+G D ++ P + D+ RIFN+DGSE CGNG RCFARF+ L+ L KQ V T G +V +QDDG+V+V+MGEPI Sbjct: 1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKQDIGVSTAKGKMVLSLQDDGQVRVNMGEPI 122
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_BURPP (Diaminopimelate epimerase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=dapF PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22 Identity = 56/125 (44.80%), Postives = 76/125 (60.80%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ P V G D+ RIFN DG E E CGNG RCF +F+ + L ++S V G I +Q++G+V VDMG P+ Sbjct: 3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRD-SGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGTPV 124
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU2 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dapF PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22 Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+ RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VDMG P Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVDMGPP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSE14 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dapF PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22 Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+ RIFNSDGSE E CGNG RCFARF+ + + L K+ V T +G+I +I+ DG++ VDMG P Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVDMGPP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_BURP8 (Diaminopimelate epimerase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dapF PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22 Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 L F K HG GNDF+++D T+P +T Q L +R+FG+GAD ++ P V+G D+ RIFN DG E E CGNG RCF +F+ + L K+S V G+I +QD+G+V VDMG P+ Sbjct: 3 LKFTKMHGAGNDFVVLDGY--TQPLNLTETQVRALANRHFGVGADQLLVVEKPTVDGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRD-SRLTDKRSVRVQVQKGVITLTMQDNGEVVVDMGAPV 124
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22 Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T +G + ++ DG V V+MG PI Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22 Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T +G + ++ DG V V+MG PI Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB5 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dapF PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22 Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T +G + ++ DG V V+MG PI Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123 The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 374
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bpback to top |