DR404728

Overview
NameDR404728
Unique NameDR404728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_HERAR (Diaminopimelate epimerase OS=Herminiimonas arsenicoxydans GN=dapF PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HG GNDF+++D  N +    TP Q   L DR FG+GAD ++    P   G D+  RI+N+DG E E CGNG R F +F+ + + L  KQ+  V T +G+I P ++ +G++ VDMG PI
Sbjct:    3 IKFTKMHGAGNDFVVIDAINQSI-HFTPAQWQHLADRRFGVGADQMLVVEKPQAAGVDFRYRIYNADGGEVEQCGNGARAFVKFVTD-KKLTDKQAIRVETMSGVIEPRLEANGQITVDMGAPI 124          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEDO (Diaminopimelate epimerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=dapF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            +HF K HGLGNDF++VD         +PEQ  +L +RNFG+G D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T +G +   ++ DG V V+MG P+
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLANRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKNKIRVSTSSGKMTLRLERDGSVVVNMGVPV 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_HAEPS (Diaminopimelate epimerase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dapF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF+++D        +T E   K  DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  KQ   V T  G +V  +QDDG+V+V+MGEPI
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKQDIGVSTAKGKMVLSLQDDGQVRVNMGEPI 122          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_BURPP (Diaminopimelate epimerase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=dapF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.267e-22
Identity = 56/125 (44.80%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            L F K HG GNDF+++D    T+P  +TP Q   L DR+FG+GAD ++    P V G D+  RIFN DG E E CGNG RCF +F+ +   L  ++S  V    G I   +Q++G+V VDMG P+
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRD-SGLTDQRSVRVQVQKGTITLTMQENGEVLVDMGTPV 124          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU2 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dapF PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF+++D   S    I P+ A +  DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T +G+I  +I+ DG++ VDMG P
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVDMGPP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSE14 (Diaminopimelate epimerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dapF PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF+++D   S    I P+ A +  DR+ GIG D ++    P     D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T +G+I  +I+ DG++ VDMG P
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHILPKHAKQWGDRHTGIGFDQLLLVEAPNNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVLD-KRLTAKKQIRVETKSGIIELDIRSDGQISVDMGPP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_BURP8 (Diaminopimelate epimerase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=dapF PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.654e-22
Identity = 56/125 (44.80%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            L F K HG GNDF+++D    T+P  +T  Q   L +R+FG+GAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L  K+S  V    G+I   +QD+G+V VDMG P+
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPLNLTETQVRALANRHFGVGADQLLVVEKPTVDGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRD-SRLTDKRSVRVQVQKGVITLTMQDNGEVVVDMGAPV 124          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB9 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS195) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T +G +   ++ DG V V+MG PI
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB8 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS185) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T +G +   ++ DG V V+MG PI
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB5 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T +G +   ++ DG V V+MG PI
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123          
The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
DAPF_HERAR9.699e-2342.74Diaminopimelate epimerase OS=Herminiimonas arsenic... [more]
DAPF_SHEDO1.267e-2244.35Diaminopimelate epimerase OS=Shewanella denitrific... [more]
DAPF_HAEPS1.267e-2245.97Diaminopimelate epimerase OS=Haemophilus parasuis ... [more]
DAPF_BURPP1.267e-2244.80Diaminopimelate epimerase OS=Burkholderia phytofir... [more]
DAPF_PSEU21.654e-2246.34Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_PSE141.654e-2246.34Diaminopimelate epimerase OS=Pseudomonas syringae ... [more]
DAPF_BURP81.654e-2244.80Diaminopimelate epimerase OS=Burkholderia phymatum... [more]
DAPF_SHEB92.161e-2245.16Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB82.161e-2245.16Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_SHEB52.161e-2245.16Diaminopimelate epimerase OS=Shewanella baltica (s... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239E01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bp
GGGGAACGGCACTGTATCACACAAACTAAACCAACCACCGCATTTGACAT
TACCGCGACCAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGC
ATGGCCATAACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCG
CTCTGCCACTCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGT
TGACTCGACAATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGC
GTCTCGGCATCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCG
AACCTCTTTTCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGT
ACCATGGCCTCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACG
GAACCTAGGATAACTCCGGAGCAAGCGGCGAAGCTGTGTGATCGGAATTT
TGGCATTGGGGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCA
CTGATTATACAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATG
TGTGGCAATGGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAA
TTTAAATGGGAAGCAAAGTTTCACTGTCCACACTGGAGCTGGTCTCATTG
TTCCAGAAATTCAAGATGACGGGAAGGTCAAAGTGGATATGGGTGAACCA
ATA
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