DR404728

Overview
NameDR404728
Unique NameDR404728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB2 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS223) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+   + L  K    V T +G +   ++ DG V V+MG PI
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PASMU (Diaminopimelate epimerase OS=Pasteurella multocida GN=dapF PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD   +     +PE   +L DR+ GIG D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T  G ++  I+DDG ++++MGEPI
Sbjct:    1 MQFSKMHGLGNDFVVVD-AITQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTDKKDIAVSTQTGKMILSIKDDGMIRINMGEPI 122          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 56/124 (45.16%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T AG +   ++ DG V V+MG P+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEE4 (Diaminopimelate epimerase OS=Pseudomonas entomophila (strain L48) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF+++D   S    I P+ A +  DRN GIG D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+   V T  G+I  ++++DG+V VDMG P
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKGGIIELDVRNDGQVCVDMGPP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T AG +   ++ DG V V+MG P+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T AG +   ++ DG V V+MG P+
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703
            + F K HGLGNDF++VD         +PEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T AG +   ++ DG V V+MG P+
Sbjct:    2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_CHRSD (Diaminopimelate epimerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dapF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            LHF K HGLGNDF+++D   +   R+  E+  +L DR+ GIG D ++   P  +   D+  RIFN+DG+E E CGNG RCFARF+ +   L  K+   V T AG +   ++DD +++VDMG P
Sbjct:    3 LHFTKMHGLGNDFVVID-LITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFRYRIFNADGNEVENCGNGARCFARFVRD-NRLTHKREIRVETQAGPLTLRVEDDERIRVDMGVP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSYWF (Diaminopimelate epimerase OS=Psychrobacter sp. (strain PRwf-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            + F K HGLGNDF+++D   +    +TPE    L DRN GIG D ++   P +    D+  RIFNSDGSE E CGNG RCFARF+ +   L+ KQ   V T +G++     + G V+VDMG+P
Sbjct:    3 IEFTKMHGLGNDFMVID-LVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFRYRIFNSDGSEVEQCGNGARCFARFV-QARKLSFKQRIRVETKSGILTLSTDNYGWVEVDMGKP 123          
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPW (Diaminopimelate epimerase OS=Pseudomonas putida (strain W619) GN=dapF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700
            L F K HGLGNDF+++D   S    I P+ A +  DR+ GIG D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+   V T  G+I  ++Q+DG+V VDMG P
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKGGIIELDVQNDGQVCVDMGPP 123          
The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 374
Match NameE-valueIdentityDescription
DAPF_SHEB22.161e-2245.16Diaminopimelate epimerase OS=Shewanella baltica (s... [more]
DAPF_PASMU2.161e-2244.35Diaminopimelate epimerase OS=Pasteurella multocida... [more]
DAPF_SHESA2.822e-2245.16Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_PSEE42.822e-2246.34Diaminopimelate epimerase OS=Pseudomonas entomophi... [more]
DAPF_SHESR3.686e-2244.35Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHESM3.686e-2244.35Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHEON3.686e-2244.35Diaminopimelate epimerase OS=Shewanella oneidensis... [more]
DAPF_CHRSD3.686e-2243.90Diaminopimelate epimerase OS=Chromohalobacter sale... [more]
DAPF_PSYWF4.814e-2245.53Diaminopimelate epimerase OS=Psychrobacter sp. (st... [more]
DAPF_PSEPW4.814e-2246.34Diaminopimelate epimerase OS=Pseudomonas putida (s... [more]

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Properties
Property NameValue
Genbank descriptionCSAA-PNP1239E01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone CSAA-PNP1239E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bp
GGGGAACGGCACTGTATCACACAAACTAAACCAACCACCGCATTTGACAT
TACCGCGACCAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGC
ATGGCCATAACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCG
CTCTGCCACTCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGT
TGACTCGACAATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGC
GTCTCGGCATCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCG
AACCTCTTTTCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGT
ACCATGGCCTCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACG
GAACCTAGGATAACTCCGGAGCAAGCGGCGAAGCTGTGTGATCGGAATTT
TGGCATTGGGGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCA
CTGATTATACAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATG
TGTGGCAATGGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAA
TTTAAATGGGAAGCAAAGTTTCACTGTCCACACTGGAGCTGGTCTCATTG
TTCCAGAAATTCAAGATGACGGGAAGGTCAAAGTGGATATGGGTGAACCA
ATA
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