DR404728
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEB2 (Diaminopimelate epimerase OS=Shewanella baltica (strain OS223) GN=dapF PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22 Identity = 56/124 (45.16%), Postives = 74/124 (59.68%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K V T +G + ++ DG V V+MG PI Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGTEVEQCGNGARCFARFVRN-KGLTNKSKIRVSTSSGKMTLRLERDGTVTVNMGVPI 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PASMU (Diaminopimelate epimerase OS=Pasteurella multocida GN=dapF PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.161e-22 Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD + +PE +L DR+ GIG D ++ P + D+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T G ++ I+DDG ++++MGEPI Sbjct: 1 MQFSKMHGLGNDFVVVD-AITQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTDKKDIAVSTQTGKMILSIKDDGMIRINMGEPI 122
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22 Identity = 56/124 (45.16%), Postives = 73/124 (58.87%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+MG P+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEE4 (Diaminopimelate epimerase OS=Pseudomonas entomophila (strain L48) GN=dapF PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22 Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF+++D S I P+ A + DRN GIG D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G+I ++++DG+V VDMG P Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRNTGIGFDQLLIVEAPSNPDVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKGGIIELDVRNDGQVCVDMGPP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22 Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+MG P+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22 Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+MG P+ Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22 Identity = 55/124 (44.35%), Postives = 73/124 (58.87%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEPI 703 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T AG + ++ DG V V+MG P+ Sbjct: 2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVSTSAGKMTLRLERDGTVTVNMGVPV 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_CHRSD (Diaminopimelate epimerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=dapF PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.686e-22 Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 LHF K HGLGNDF+++D + R+ E+ +L DR+ GIG D ++ P + D+ RIFN+DG+E E CGNG RCFARF+ + L K+ V T AG + ++DD +++VDMG P Sbjct: 3 LHFTKMHGLGNDFVVID-LITQRARLDTERIRQLADRHVGIGFDQLLLVEPPRDPEMDFRYRIFNADGNEVENCGNGARCFARFVRD-NRLTHKREIRVETQAGPLTLRVEDDERIRVDMGVP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSYWF (Diaminopimelate epimerase OS=Psychrobacter sp. (strain PRwf-1) GN=dapF PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22 Identity = 56/123 (45.53%), Postives = 75/123 (60.98%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 + F K HGLGNDF+++D + +TPE L DRN GIG D ++ P + D+ RIFNSDGSE E CGNG RCFARF+ + L+ KQ V T +G++ + G V+VDMG+P Sbjct: 3 IEFTKMHGLGNDFMVID-LVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFRYRIFNSDGSEVEQCGNGARCFARFV-QARKLSFKQRIRVETKSGILTLSTDNYGWVEVDMGKP 123
BLAST of DR404728 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPW (Diaminopimelate epimerase OS=Pseudomonas putida (strain W619) GN=dapF PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22 Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 2 Query: 335 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAAKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHTGAGLIVPEIQDDGKVKVDMGEP 700 L F K HGLGNDF+++D S I P+ A + DR+ GIG D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T G+I ++Q+DG+V VDMG P Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVETKGGIIELDVQNDGQVCVDMGPP 123 The following BLAST results are available for this feature:
BLAST of DR404728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 374
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Sequences
The
following sequences are available for this feature:
EST sequence >DR404728 ID=DR404728; Name=DR404728; organism=Citrus sinensis; type=EST; length=703bpback to top |