DR404633

Overview
NameDR404633
Unique NameDR404633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_PHEZH (30S ribosomal protein S11 OS=Phenylobacterium zucineum (strain HLK1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GVAH+ ASFN+T + +TD  G        G M  K  R +S+PYAA +AA+D   +  E G+  L + +               +SALRAL   GM I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMVTITDAQGNTISWSSAGLMGFKGSR-KSTPYAAQMAAEDAGRKAAEHGVRTLEVNVSG--------PGSGRESALRALQAVGMTITTIRDVTPIP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_LEPCP (30S ribosomal protein S11 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GVAH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+      +E GI  L +K++              +S++RALA  G++I  I DVTP+P
Sbjct:   24 GVAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVAAEVAGRAAQEQGIKNLDVKIKG--------PGPGRESSVRALASLGIRIASISDVTPVP 122          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_CUPTR (30S ribosomal protein S11 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G        GG   K  R +S+P+AA +AA++     ++ GI  L ++++              +SA+RAL   G+KI  IEDVTPIP
Sbjct:   22 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAIIEDVTPIP 120          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_WIGBR (30S ribosomal protein S11 OS=Wigglesworthia glossinidia brevipalpis GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = 1
Query:  136 KEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            K++N ++       + + G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+  S   KE GI  L I ++              +S +RAL  SG KI  I DVTPIP
Sbjct:    3 KKQNSSISRKKIKRQILEGIAHIHASFNNTIVTITDRQGNTLGWATSGGSGFRGSR-KSTPFAAQVAAEKCSEIAKEYGIKNLEIMVKG--------PGPGRESTIRALNSSGFKITNITDVTPIP 119          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_THISH (30S ribosomal protein S11 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AHI+A+FN+T + +TD  G       +GG   +  R +S+P+AA +AA+   T  +E G+  L + +R              +SA+RAL  +G KI  I D+TPIP
Sbjct:   19 GIAHIYATFNNTIVTITDRQGNTLSWATSGGSGFRGSR-KSTPFAAQVAAERAGTAAQEYGLKNLEVLVRG--------PGPGRESAVRALNNAGFKILNISDITPIP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_RALPJ (30S ribosomal protein S11 OS=Ralstonia pickettii (strain 12J) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+      ++ GI  L ++++              +SA+RAL   G+KI  IEDVTP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNNLGIKIQLIEDVTPVP 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_RALME (30S ribosomal protein S11 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G        GG   K  R +S+P+AA +AA++     ++ GI  L ++++              +SA+RAL   G+KI  IEDVTP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAVIEDVTPVP 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_NITMU (30S ribosomal protein S11 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T + +TD  G       +GG   K  R +S+P+AA +AA+      +E G+  L ++++              +SA+RAL  +G KI  I DVTP+P
Sbjct:   19 GIAHVHASFNNTIVTITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEQAGRAAQEYGVKNLEVRIKG--------PGPGRESAVRALNAAGFKITSISDVTPVP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_AZOSB (30S ribosomal protein S11 OS=Azoarcus sp. (strain BH72) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+      +E G+  L ++++              +SA+RAL   GMKI  I D+TPIP
Sbjct:   19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAQECGVKNLEVRIKG--------PGPGRESAVRALNALGMKISSITDITPIP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_ALCBS (30S ribosomal protein S11 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G       +GG   +  R +S+P+AA +AA++     K+ G+  L ++++              +S++RAL   G KI  IEDVTPIP
Sbjct:   22 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFRGSR-KSTPFAAQVAAENAGNAAKDYGLKNLEVRVKG--------PGPGRESSIRALNGCGYKITHIEDVTPIP 120          
The following BLAST results are available for this feature:
BLAST of DR404633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_PHEZH1.395e-1139.8130S ribosomal protein S11 OS=Phenylobacterium zuci... [more]
RS11_LEPCP1.395e-1137.9630S ribosomal protein S11 OS=Leptothrix cholodnii ... [more]
RS11_CUPTR1.395e-1137.9630S ribosomal protein S11 OS=Cupriavidus taiwanens... [more]
RS11_WIGBR1.822e-1135.7130S ribosomal protein S11 OS=Wigglesworthia glossi... [more]
RS11_THISH1.822e-1136.1130S ribosomal protein S11 OS=Thioalkalivibrio sp. ... [more]
RS11_RALPJ1.822e-1137.0430S ribosomal protein S11 OS=Ralstonia pickettii (... [more]
RS11_RALME1.822e-1137.0430S ribosomal protein S11 OS=Ralstonia metallidura... [more]
RS11_NITMU1.822e-1135.1930S ribosomal protein S11 OS=Nitrosospira multifor... [more]
RS11_AZOSB1.822e-1137.0430S ribosomal protein S11 OS=Azoarcus sp. (strain ... [more]
RS11_ALCBS1.822e-1136.1130S ribosomal protein S11 OS=Alcanivorax borkumens... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404633 ID=DR404633; Name=DR404633; organism=Citrus sinensis; type=EST; length=731bp
GGGGATAGAGAGACCGAGTGCATCAGTCTATTGTTTAGGGTTTTCACATT
TTCCTTTCGTCTAGGAACAAACCCTAGCCTTCTCAATCCATCTCGTGTTT
TCGCAGGCATGTCGAGGAGAAAGAATAGGGAGCCTAAGGAAGAGAATGTG
ACTCTAGGACCTGCTGTGAGAGATGGGGAGCATGTCTTTGGAGTTGCCCA
CATCTTTGCATCGTTCAATGATACATTTATTCATGTGACTGATCTGTCAG
GCAGAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAAGCTGAC
CGAGATGAGTCCTCTCCTTACGCTGCCATGCTTGCAGCACAAGATGTTTC
AACCAGATGCAAGGAGCTTGGAATCACTGCTCTTCATATTAAGCTGCGTG
CTACTGGTGGGAACAAAACCAAAACACCCGGTCCAGGTGCCCAGTCTGCT
CTTCGTGCCCTTGCTCGTTCTGGGATGAAAATTGGTCGCATAGAGGATGT
GACCCCTATTCCCACTGATAGCACACGCAGAAAGGGTGGTAGAAGAGGAA
GAAGGCTTTAAGCTGTCTTGTTTGTCCGATTGTCTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAA
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