DR404633

Overview
NameDR404633
Unique NameDR404633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_STRPZ (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            FGVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  +   +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   16 FGVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_RHORT (30S ribosomal protein S11 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD+ G        G    K  R +S+PYAA +AA+D   + +E G+  L + ++              +SALRAL   G ++  I+DVTPIP
Sbjct:   19 GIAHVSASFNNTKITITDVQGNAIAWSSAGAQGFKGSR-KSTPYAAQVAAEDAGRKAQEHGMKTLEVMVKG--------PGSGRESALRALQSVGFQVTSIKDVTPIP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_RALSO (30S ribosomal protein S11 OS=Ralstonia solanacearum GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+      ++ GI  L ++++              +SA+RAL   G+KI  IEDVTP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNNLGIKIQVIEDVTPVP 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_ERYLH (30S ribosomal protein S11 OS=Erythrobacter litoralis (strain HTCC2594) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 43/108 (39.81%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA D   +  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAADDAGRKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFTITSIRDVTPIP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BUCCC (30S ribosomal protein S11 OS=Buchnera aphidicola subsp. Cinara cedri GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  109 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            MS++K  +PK+    +   + DG     +AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+  + R K+ GI  L + ++              +S +RAL  SG +I  I DVTPIP
Sbjct:    1 MSKKKLNQPKKR---IKRQILDG-----IAHIHASFNNTIVTITDRKGNTLGWATSGGSGFRGSR-KSTPFAAQVAAEKCADRVKDYGIKNLEVMIKG--------PGPGRESTIRALNSSGFRITNIIDVTPIP 118          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_METEP (30S ribosomal protein S11 OS=Methylobacterium extorquens (strain PA1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  184 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D + +  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVAASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKASEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_METC4 (30S ribosomal protein S11 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  184 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D + +  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVAASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKASEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_POLSQ (30S ribosomal protein S11 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E GI  L ++++              +SA+RAL   G+KI  I+DVTP+P
Sbjct:   25 GIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAEVAGKAAVECGIKNLEVQIKG--------PGPGRESAVRALNSLGIKITEIQDVTPVP 123          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_NOVAD (30S ribosomal protein S11 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 41/108 (37.96%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T + +TD  G        G M  K  R +S+PYAA +AA D   +  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GIAHVNASFNNTMVTITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAADDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFTITAIRDVTPIP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_NITHX (30S ribosomal protein S11 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS + +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   20 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTAIP 118          
The following BLAST results are available for this feature:
BLAST of DR404633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_STRPZ2.379e-1133.9430S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_RHORT2.379e-1137.0430S ribosomal protein S11 OS=Rhodospirillum rubrum... [more]
RS11_RALSO2.379e-1137.0430S ribosomal protein S11 OS=Ralstonia solanacearu... [more]
RS11_ERYLH2.379e-1139.8130S ribosomal protein S11 OS=Erythrobacter litoral... [more]
RS11_BUCCC2.379e-1134.0730S ribosomal protein S11 OS=Buchnera aphidicola s... [more]
RS11_METEP3.108e-1138.1830S ribosomal protein S11 OS=Methylobacterium exto... [more]
RS11_METC43.108e-1138.1830S ribosomal protein S11 OS=Methylobacterium chlo... [more]
RS11_POLSQ4.059e-1137.0430S ribosomal protein S11 OS=Polynucleobacter sp. ... [more]
RS11_NOVAD4.059e-1137.9630S ribosomal protein S11 OS=Novosphingobium aroma... [more]
RS11_NITHX4.059e-1138.8930S ribosomal protein S11 OS=Nitrobacter hamburgen... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404633 ID=DR404633; Name=DR404633; organism=Citrus sinensis; type=EST; length=731bp
GGGGATAGAGAGACCGAGTGCATCAGTCTATTGTTTAGGGTTTTCACATT
TTCCTTTCGTCTAGGAACAAACCCTAGCCTTCTCAATCCATCTCGTGTTT
TCGCAGGCATGTCGAGGAGAAAGAATAGGGAGCCTAAGGAAGAGAATGTG
ACTCTAGGACCTGCTGTGAGAGATGGGGAGCATGTCTTTGGAGTTGCCCA
CATCTTTGCATCGTTCAATGATACATTTATTCATGTGACTGATCTGTCAG
GCAGAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAAGCTGAC
CGAGATGAGTCCTCTCCTTACGCTGCCATGCTTGCAGCACAAGATGTTTC
AACCAGATGCAAGGAGCTTGGAATCACTGCTCTTCATATTAAGCTGCGTG
CTACTGGTGGGAACAAAACCAAAACACCCGGTCCAGGTGCCCAGTCTGCT
CTTCGTGCCCTTGCTCGTTCTGGGATGAAAATTGGTCGCATAGAGGATGT
GACCCCTATTCCCACTGATAGCACACGCAGAAAGGGTGGTAGAAGAGGAA
GAAGGCTTTAAGCTGTCTTGTTTGTCCGATTGTCTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAA
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