DR404633

Overview
NameDR404633
Unique NameDR404633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_THIDA (30S ribosomal protein S11 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 39/108 (36.11%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AHI ASFN+T + +TD  G        GG   K  R +S+P+AA +AA++     +E G+  L ++++              +S +RAL   G KI  I DVTPIP
Sbjct:   20 GIAHIHASFNNTIVTITDRQGNALSWATAGGAGFKGSR-KSTPFAAQVAAENAGKMAQEYGVKNLEVRIKG--------PGPGRESTVRALNALGFKIVAISDVTPIP 118
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_ROSDO (30S ribosomal protein S11 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 510
            GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D   + +E G+  L ++++              +SALRALA +G  I  I DVTP+
Sbjct:   19 GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGRKAQEHGVKTLEVEVQG--------PGSGRESALRALAAAGFNITSIRDVTPM 116
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_NITEU (30S ribosomal protein S11 OS=Nitrosomonas europaea GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:  184 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            V GVAHI ASFN+T + ++D  G       +GG+  K  R +S+P+AA +AA+       E G+  L ++++               SA+RAL  +G KI  I DVTPIP
Sbjct:   17 VEGVAHIHASFNNTIVTISDRQGNALSWATSGGVGFKGSR-KSTPFAAQVAAEHAGRAALEYGVKNLEVRVKG--------PGPGRDSAVRALNATGFKITSITDVTPIP 117
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_MYXXD (30S ribosomal protein S11 OS=Myxococcus xanthus (strain DK 1622) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV HI ++FN+T I +TD+SG        G    K  R +S+P+AA +AA D + +  E G+  + + ++              +SALRALA +G+KI  I DVTPIP
Sbjct:   36 GVVHIQSTFNNTIITITDVSGNVISWSSAGARGFKGSR-KSTPFAAQVAAGDAAAKAMEHGLKNVSVFVKGPGAGR--------ESALRALAAAGLKINLIRDVTPIP 134
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURVG (30S ribosomal protein S11 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURTA (30S ribosomal protein S11 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURS3 (30S ribosomal protein S11 OS=Burkholderia sp. (strain 383) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURPS (30S ribosomal protein S11 OS=Burkholderia pseudomallei GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURP6 (30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain 668) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURP1 (30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
The following BLAST results are available for this feature:
BLAST of DR404633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_THIDA9.042e-1136.1130S ribosomal protein S11 OS=Thiobacillus denitrif... [more]
RS11_ROSDO9.042e-1137.3830S ribosomal protein S11 OS=Roseobacter denitrifi... [more]
RS11_NITEU9.042e-1137.2730S ribosomal protein S11 OS=Nitrosomonas europaea... [more]
RS11_MYXXD9.042e-1137.9630S ribosomal protein S11 OS=Myxococcus xanthus (s... [more]
RS11_BURVG9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia vietnami... [more]
RS11_BURTA9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia thailand... [more]
RS11_BURS39.042e-1137.0430S ribosomal protein S11 OS=Burkholderia sp. (str... [more]
RS11_BURPS9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia pseudoma... [more]
RS11_BURP69.042e-1137.0430S ribosomal protein S11 OS=Burkholderia pseudoma... [more]
RS11_BURP19.042e-1137.0430S ribosomal protein S11 OS=Burkholderia pseudoma... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404633 ID=DR404633; Name=DR404633; organism=Citrus sinensis; type=EST; length=731bp
GGGGATAGAGAGACCGAGTGCATCAGTCTATTGTTTAGGGTTTTCACATT
TTCCTTTCGTCTAGGAACAAACCCTAGCCTTCTCAATCCATCTCGTGTTT
TCGCAGGCATGTCGAGGAGAAAGAATAGGGAGCCTAAGGAAGAGAATGTG
ACTCTAGGACCTGCTGTGAGAGATGGGGAGCATGTCTTTGGAGTTGCCCA
CATCTTTGCATCGTTCAATGATACATTTATTCATGTGACTGATCTGTCAG
GCAGAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAAGCTGAC
CGAGATGAGTCCTCTCCTTACGCTGCCATGCTTGCAGCACAAGATGTTTC
AACCAGATGCAAGGAGCTTGGAATCACTGCTCTTCATATTAAGCTGCGTG
CTACTGGTGGGAACAAAACCAAAACACCCGGTCCAGGTGCCCAGTCTGCT
CTTCGTGCCCTTGCTCGTTCTGGGATGAAAATTGGTCGCATAGAGGATGT
GACCCCTATTCCCACTGATAGCACACGCAGAAAGGGTGGTAGAAGAGGAA
GAAGGCTTTAAGCTGTCTTGTTTGTCCGATTGTCTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAA
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