DR404633

Overview
NameDR404633
Unique NameDR404633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURP0 (30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURMS (30S ribosomal protein S11 OS=Burkholderia mallei (strain SAVP1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURMA (30S ribosomal protein S11 OS=Burkholderia mallei GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURM9 (30S ribosomal protein S11 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURM7 (30S ribosomal protein S11 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURM1 (30S ribosomal protein S11 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURCM (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURCJ (30S ribosomal protein S11 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURCH (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURCC (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
The following BLAST results are available for this feature:
BLAST of DR404633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_BURP09.042e-1137.0430S ribosomal protein S11 OS=Burkholderia pseudoma... [more]
RS11_BURMS9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia mallei (... [more]
RS11_BURMA9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia mallei G... [more]
RS11_BURM99.042e-1137.0430S ribosomal protein S11 OS=Burkholderia mallei (... [more]
RS11_BURM79.042e-1137.0430S ribosomal protein S11 OS=Burkholderia mallei (... [more]
RS11_BURM19.042e-1137.0430S ribosomal protein S11 OS=Burkholderia multivor... [more]
RS11_BURCM9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia ambifari... [more]
RS11_BURCJ9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia cepacia ... [more]
RS11_BURCH9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURCC9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia cenocepa... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404633 ID=DR404633; Name=DR404633; organism=Citrus sinensis; type=EST; length=731bp
GGGGATAGAGAGACCGAGTGCATCAGTCTATTGTTTAGGGTTTTCACATT
TTCCTTTCGTCTAGGAACAAACCCTAGCCTTCTCAATCCATCTCGTGTTT
TCGCAGGCATGTCGAGGAGAAAGAATAGGGAGCCTAAGGAAGAGAATGTG
ACTCTAGGACCTGCTGTGAGAGATGGGGAGCATGTCTTTGGAGTTGCCCA
CATCTTTGCATCGTTCAATGATACATTTATTCATGTGACTGATCTGTCAG
GCAGAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAAGCTGAC
CGAGATGAGTCCTCTCCTTACGCTGCCATGCTTGCAGCACAAGATGTTTC
AACCAGATGCAAGGAGCTTGGAATCACTGCTCTTCATATTAAGCTGCGTG
CTACTGGTGGGAACAAAACCAAAACACCCGGTCCAGGTGCCCAGTCTGCT
CTTCGTGCCCTTGCTCGTTCTGGGATGAAAATTGGTCGCATAGAGGATGT
GACCCCTATTCCCACTGATAGCACACGCAGAAAGGGTGGTAGAAGAGGAA
GAAGGCTTTAAGCTGTCTTGTTTGTCCGATTGTCTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAA
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