DR404633

Overview
NameDR404633
Unique NameDR404633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9860 contig Csv1_Contig9860:14..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURCA (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BURA4 (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BORPE (30S ribosomal protein S11 OS=Bordetella pertussis GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BORPA (30S ribosomal protein S11 OS=Bordetella parapertussis GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BORBR (30S ribosomal protein S11 OS=Bordetella bronchiseptica GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BORA1 (30S ribosomal protein S11 OS=Bordetella avium (strain 197N) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+       E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_BEII9 (30S ribosomal protein S11 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  184 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            V GVAH+ ++FN+T I +TD  G        G M  K  R +S+PYAA +AA+D + +  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNSTFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDCARKAVEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_ALTMD (30S ribosomal protein S11 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            G+AHI ASFN+T + +TD SG       +GG   +  R +S+P+AA +AA+      +E G+  L + ++              +SA+RAL  +G KI  I DVTPIP
Sbjct:   20 GMAHIHASFNNTIVTITDRSGNALAWATSGGSGFRGSR-KSTPFAAQVAAERAGVAAQEYGLKNLEVFVKG--------PGPGRESAIRALNATGYKITNITDVTPIP 118          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_ACICJ (30S ribosomal protein S11 OS=Acidiphilium cryptum (strain JF-5) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  190 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 513
            GVAH+ ASFN+T + ++D  G        G    K  R +S+PYAA +AA+D   + +E G+  L I++               +SALRAL   G  I  I D+TPIP
Sbjct:   20 GVAHVLASFNNTMVTISDAQGNAISWSSAGSQGFKGSR-KSTPYAAQVAAEDAGRKAREHGMETLEIEVSG--------PGAGRESALRALQTIGFSITAIRDLTPIP 118          
The following BLAST results are available for this feature:
BLAST of DR404633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_BURCA9.042e-1137.0430S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURA49.042e-1137.0430S ribosomal protein S11 OS=Burkholderia ambifari... [more]
RS11_BORPE9.042e-1135.1930S ribosomal protein S11 OS=Bordetella pertussis ... [more]
RS11_BORPA9.042e-1135.1930S ribosomal protein S11 OS=Bordetella parapertus... [more]
RS11_BORBR9.042e-1135.1930S ribosomal protein S11 OS=Bordetella bronchisep... [more]
RS11_BORA19.042e-1135.1930S ribosomal protein S11 OS=Bordetella avium (str... [more]
RS11_BEII99.042e-1137.2730S ribosomal protein S11 OS=Beijerinckia indica s... [more]
RS11_ALTMD9.042e-1137.0430S ribosomal protein S11 OS=Alteromonas macleodii... [more]
RS11_ACICJ9.042e-1137.0430S ribosomal protein S11 OS=Acidiphilium cryptum ... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404633 ID=DR404633; Name=DR404633; organism=Citrus sinensis; type=EST; length=731bp
GGGGATAGAGAGACCGAGTGCATCAGTCTATTGTTTAGGGTTTTCACATT
TTCCTTTCGTCTAGGAACAAACCCTAGCCTTCTCAATCCATCTCGTGTTT
TCGCAGGCATGTCGAGGAGAAAGAATAGGGAGCCTAAGGAAGAGAATGTG
ACTCTAGGACCTGCTGTGAGAGATGGGGAGCATGTCTTTGGAGTTGCCCA
CATCTTTGCATCGTTCAATGATACATTTATTCATGTGACTGATCTGTCAG
GCAGAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAAGCTGAC
CGAGATGAGTCCTCTCCTTACGCTGCCATGCTTGCAGCACAAGATGTTTC
AACCAGATGCAAGGAGCTTGGAATCACTGCTCTTCATATTAAGCTGCGTG
CTACTGGTGGGAACAAAACCAAAACACCCGGTCCAGGTGCCCAGTCTGCT
CTTCGTGCCCTTGCTCGTTCTGGGATGAAAATTGGTCGCATAGAGGATGT
GACCCCTATTCCCACTGATAGCACACGCAGAAAGGGTGGTAGAAGAGGAA
GAAGGCTTTAAGCTGTCTTGTTTGTCCGATTGTCTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAA
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