DR404633

Overview
NameDR404633
Unique NameDR404633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9860 contig Csv1_Contig9860:14..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_AERPE (30S ribosomal protein S11P OS=Aeropyrum pernix GN=rps11p PE=3 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.027e-30
Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +GVAHI++SFN+T +H+TDL+G ET+ R+TGGM VKADR++ SPYAAM+AA   + +  E GI A+HIK+RA            AQ+A+RALAR+G  IGRIEDVTPIP D+T
Sbjct:   10 WGVAHIYSSFNNTHVHITDLTGAETVARVTGGMVVKADREKPSPYAAMIAASRAAQKAMERGIAAIHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTT 122          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_PYRKO (30S ribosomal protein S11P OS=Pyrococcus kodakaraensis GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.289e-30
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADRDE SPYAAM+AA+  +    E GIT +HIK+RA            AQ+A+RAL+R+G++IGR+EDVTPIP D T
Sbjct:   17 WGVAHIYSSYNNTIIHITDLTGAETISRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGITGVHIKVRAPGGSKSKSPGPGAQAAIRALSRAGLRIGRVEDVTPIPHDGT 129          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_PYRFU (30S ribosomal protein S11P OS=Pyrococcus furiosus GN=rps11p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.989e-30
Identity = 64/113 (56.64%), Postives = 84/113 (74.34%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +G+AHI++SFN+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  +    E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   14 WGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_PYRHO (30S ribosomal protein S11P OS=Pyrococcus horikoshii GN=rps11p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  +    E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_PYRAB (30S ribosomal protein S11P OS=Pyrococcus abyssi GN=rps11p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +G+AHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAMLAA+  +    E GI  +HI++RA            AQ+A+RALAR+G+KIGR+EDVTPIP D T
Sbjct:   14 WGIAHIYSSYNNTIIHITDITGAETISRWSGGMVVKADRDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGT 126          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_METMJ (30S ribosomal protein S11P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 1
Query:  178 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 522
            E  +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK DR+ESSPYAAM  A  V+   ++ GIT +H+K+RA            AQ+A+RALAR+GM+IGRIEDVTP+P DS
Sbjct:    3 EEKWGIAHIFASFNNTIITVTDLSGAETVTKSSGGMVVKQDRNESSPYAAMQMAIQVAQNARDKGITGVHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDS 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_METKA (30S ribosomal protein S11P OS=Methanopyrus kandleri GN=rps11p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.659e-30
Identity = 66/113 (58.41%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +G+AHI+ASFN+T I +TDL+G ET  R +GGM V ADR+ESSPYAAM AA+  +    E GITA+H+K+RA            AQ+A+RALAR+G+KIGRIEDVTPIP D T
Sbjct:   14 WGIAHIYASFNNTIITITDLTGAETFARWSGGMVVDADREESSPYAAMKAARRAAEEAMEKGITAVHVKVRAPGGHGPKTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 126          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_THEON (30S ribosomal protein S11P OS=Thermococcus onnurineus (strain NA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.483e-29
Identity = 63/113 (55.75%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADRDE SPYAAM+AA+  +    E G   +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   16 WGVAHIYSSYNNTIIHITDLTGAETVSRWSGGMVVKADRDEPSPYAAMIAAKRAAEEAMEKGFVGVHIKVRAPGGSKSKTPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 128          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_METB6 (30S ribosomal protein S11P OS=Methanoregula boonei (strain 6A8) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.937e-29
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 522
            +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK DR+ESSPYAAM  A +V+   +E GI  +H+K+RA            AQ+A+RALAR+GM+IGRIEDVTP+P DS
Sbjct:    9 WGIAHIFASFNNTIITVTDLSGAETVTKSSGGMVVKQDRNESSPYAAMQMAANVAAIAREKGIVGVHVKVRAPGQGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDS 120          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_THEGJ (30S ribosomal protein S11P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 62/113 (54.87%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +GVAHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAM+AA+  +    E G   +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   15 WGVAHIYSSYNNTIIHITDITGAETVSRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGFVGVHIKVRAPGGSKSKSPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 127          
The following BLAST results are available for this feature:
BLAST of DR404633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_AERPE1.027e-3057.5230S ribosomal protein S11P OS=Aeropyrum pernix GN=... [more]
RS11_PYRKO2.289e-3056.6430S ribosomal protein S11P OS=Pyrococcus kodakarae... [more]
RS11_PYRFU2.989e-3056.6430S ribosomal protein S11P OS=Pyrococcus furiosus ... [more]
RS11_PYRHO6.659e-3055.7530S ribosomal protein S11P OS=Pyrococcus horikoshi... [more]
RS11_PYRAB6.659e-3055.7530S ribosomal protein S11P OS=Pyrococcus abyssi GN... [more]
RS11_METMJ6.659e-3057.3930S ribosomal protein S11P OS=Methanoculleus maris... [more]
RS11_METKA6.659e-3058.4130S ribosomal protein S11P OS=Methanopyrus kandler... [more]
RS11_THEON1.483e-2955.7530S ribosomal protein S11P OS=Thermococcus onnurin... [more]
RS11_METB61.937e-2958.0430S ribosomal protein S11P OS=Methanoregula boonei... [more]
RS11_THEGJ2.530e-2954.8730S ribosomal protein S11P OS=Thermococcus gammato... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404633 ID=DR404633; Name=DR404633; organism=Citrus sinensis; type=EST; length=731bp
GGGGATAGAGAGACCGAGTGCATCAGTCTATTGTTTAGGGTTTTCACATT
TTCCTTTCGTCTAGGAACAAACCCTAGCCTTCTCAATCCATCTCGTGTTT
TCGCAGGCATGTCGAGGAGAAAGAATAGGGAGCCTAAGGAAGAGAATGTG
ACTCTAGGACCTGCTGTGAGAGATGGGGAGCATGTCTTTGGAGTTGCCCA
CATCTTTGCATCGTTCAATGATACATTTATTCATGTGACTGATCTGTCAG
GCAGAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAAGCTGAC
CGAGATGAGTCCTCTCCTTACGCTGCCATGCTTGCAGCACAAGATGTTTC
AACCAGATGCAAGGAGCTTGGAATCACTGCTCTTCATATTAAGCTGCGTG
CTACTGGTGGGAACAAAACCAAAACACCCGGTCCAGGTGCCCAGTCTGCT
CTTCGTGCCCTTGCTCGTTCTGGGATGAAAATTGGTCGCATAGAGGATGT
GACCCCTATTCCCACTGATAGCACACGCAGAAAGGGTGGTAGAAGAGGAA
GAAGGCTTTAAGCTGTCTTGTTTGTCCGATTGTCTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAA
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