DR404633

Overview
NameDR404633
Unique NameDR404633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_METHJ (30S ribosomal protein S11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 1
Query:  172 DGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 522
            +G+  +GVAHI+ASFN+T I VTDL+G ET+ + +GGM VK DR+ESSPYAAM  A +V+   +E GI  LH+K+RA            AQ+A+RALAR+GM+IG IEDVTP+P DS
Sbjct:    3 EGKEKWGVAHIYASFNNTIITVTDLTGAETITKSSGGMVVKQDRNESSPYAAMQMAGNVAQAAREKGIVGLHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGLIEDVTPVPHDS 119          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_IGNH4 (30S ribosomal protein S11P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 522
            +GVAHIF+S N+TF+H+TD++G ET  R+TGGM VKAD ++ SPYAAM+AA   + +  E GITA+HIK+RA            AQ+A+RALARSG  IGRIEDVTP+P D+
Sbjct:    7 WGVAHIFSSPNNTFVHITDITGSETASRVTGGMVVKADHEKPSPYAAMIAAARAAQQAMERGITAIHIKVRAPGGYGPKTPGPGAQAAIRALARSGFIIGRIEDVTPLPHDT 118          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_HYPBU (30S ribosomal protein S11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.530e-29
Identity = 64/113 (56.64%), Postives = 84/113 (74.34%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADR++ SPYAAMLAA   + +  + GI ALHIK+RA            AQ+A+RALAR+G  IGRIEDVTP+P D+T
Sbjct:   10 WGVAHIYSSYNNTIIHITDLTGAETVARTSGGMVVKADREKPSPYAAMLAASRAAQQAMDRGIMALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPLPHDTT 122          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_STAMF (30S ribosomal protein S11P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +GVAHI++S N+T IH+TDL+G ET+ R +GGM VKADR++ SPYAAM+AA   +    + GITALHIK+RA            AQ+A+RALAR+G  IGRIEDVTPIP D+T
Sbjct:   10 WGVAHIYSSLNNTIIHITDLTGAETVSRWSGGMVVKADREKPSPYAAMIAASRAAAEAMDKGITALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTT 122          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS14_ENCCU (40S ribosomal protein S14 OS=Encephalitozoon cuniculi GN=RPS14 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.362e-29
Identity = 61/109 (55.96%), Postives = 79/109 (72.48%), Query Frame = 1
Query:  193 VAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 519
            VAHI A+ NDTF+H+TD++G ET+ +ITGGM+VKA RDE SPYAAMLAAQDV+T+    G+  LH KLR             AQ+A+R L R+G+++GRIEDVTP+  D
Sbjct:   13 VAHIKATKNDTFVHITDMTGSETIAKITGGMRVKAQRDEGSPYAAMLAAQDVATKILGRGVKVLHFKLRGAGGVKPMALGPGAQTAIRTLIRAGLRVGRIEDVTPVARD 121          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_METLZ (30S ribosomal protein S11P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps11p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 522
            +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK  R+ESSPYAAM  A +++   K+ GIT LHI++RA            AQ+A+RAL+R+GM+IGRIEDVTP+P DS
Sbjct:    8 WGIAHIFASFNNTIITVTDLSGAETICKSSGGMVVKQARNESSPYAAMQMAINIAQASKDKGITGLHIRVRAPGNGRQRSPGPGAQAAIRALSRAGMRIGRIEDVTPVPHDS 119          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_METTP (30S ribosomal protein S11P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps11p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 1
Query:  178 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            E  + +AHI++SFN+T I +TDL+G ET+ +I+GGM VKA RDESSPY AM  A  V+ + K  GI  +H+K+RA            AQ+A+RALAR+G++IGRIEDVTPIP D T
Sbjct:    3 EGKWAIAHIYSSFNNTLITITDLTGAETIAKISGGMVVKAARDESSPYTAMQMAMQVAEQAKAKGIVGVHVKVRAPGGNKQRSPGPGAQAAIRALARAGLRIGRIEDVTPIPHDGT 118          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_META3 (30S ribosomal protein S11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps11p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +GV HI+AS+N+T IHVTD++G ET+ +I+GGM VK  +DESSPYAAM  A  ++   +E GI  +HIK+RA            AQ+A+RALAR+G+KIGRIED TPIP D T
Sbjct:    5 WGVIHIYASYNNTIIHVTDITGAETIAKISGGMIVKNQKDESSPYAAMQGAFKIADMIREKGIDKVHIKVRATGGSKSKNPGPGAQAAIRALARAGIKIGRIEDATPIPHDGT 117          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_ARCFU (30S ribosomal protein S11P OS=Archaeoglobus fulgidus GN=rps11p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            +G+AHI++S+N+T I +TD++G E + R++GGM VKADRDE +PY AM AA   +   KE GI  +HIK+RA            AQ+A+RALAR+G+KIGRIEDVTPIP D T
Sbjct:   10 WGIAHIYSSYNNTIITITDITGAEIIARVSGGMIVKADRDEGNPYTAMQAALRAAAIAKEKGIDGVHIKVRAPGGNKHTTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 122          
BLAST of DR404633 vs. ExPASy Swiss-Prot
Match: RS11_UNCMA (30S ribosomal protein S11P OS=Uncultured methanogenic archaeon RC-I GN=rps11p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 62/113 (54.87%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  187 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 525
            + +AHIF+SFN+T I VTDL+G ETL + +GGM VK DR+ESSPYAAM  A +V+ + K  GI  +HI++RA            AQ+A+R+LAR+G++IGRIEDVTPIP D T
Sbjct:    9 WAIAHIFSSFNNTIITVTDLTGAETLAKTSGGMVVKQDRNESSPYAAMQMAMNVAEQIKAKGIQGVHIRVRAPGGNHQRSPGPGAQAAIRSLARAGLRIGRIEDVTPIPHDGT 121          
The following BLAST results are available for this feature:
BLAST of DR404633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_METHJ2.530e-2955.5630S ribosomal protein S11P OS=Methanospirillum hun... [more]
RS11_IGNH42.530e-2957.1430S ribosomal protein S11P OS=Ignicoccus hospitali... [more]
RS11_HYPBU2.530e-2956.6430S ribosomal protein S11P OS=Hyperthermus butylic... [more]
RS11_STAMF3.305e-2957.5230S ribosomal protein S11P OS=Staphylothermus mari... [more]
RS14_ENCCU7.362e-2955.9640S ribosomal protein S14 OS=Encephalitozoon cunic... [more]
RS11_METLZ1.640e-2857.1430S ribosomal protein S11P OS=Methanocorpusculum l... [more]
RS11_METTP3.654e-2853.4530S ribosomal protein S11P OS=Methanosaeta thermop... [more]
RS11_META34.772e-2854.8730S ribosomal protein S11P OS=Methanococcus aeolic... [more]
RS11_ARCFU4.772e-2853.9830S ribosomal protein S11P OS=Archaeoglobus fulgid... [more]
RS11_UNCMA1.063e-2754.8730S ribosomal protein S11P OS=Uncultured methanoge... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P08 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404633 ID=DR404633; Name=DR404633; organism=Citrus sinensis; type=EST; length=731bp
GGGGATAGAGAGACCGAGTGCATCAGTCTATTGTTTAGGGTTTTCACATT
TTCCTTTCGTCTAGGAACAAACCCTAGCCTTCTCAATCCATCTCGTGTTT
TCGCAGGCATGTCGAGGAGAAAGAATAGGGAGCCTAAGGAAGAGAATGTG
ACTCTAGGACCTGCTGTGAGAGATGGGGAGCATGTCTTTGGAGTTGCCCA
CATCTTTGCATCGTTCAATGATACATTTATTCATGTGACTGATCTGTCAG
GCAGAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAAGCTGAC
CGAGATGAGTCCTCTCCTTACGCTGCCATGCTTGCAGCACAAGATGTTTC
AACCAGATGCAAGGAGCTTGGAATCACTGCTCTTCATATTAAGCTGCGTG
CTACTGGTGGGAACAAAACCAAAACACCCGGTCCAGGTGCCCAGTCTGCT
CTTCGTGCCCTTGCTCGTTCTGGGATGAAAATTGGTCGCATAGAGGATGT
GACCCCTATTCCCACTGATAGCACACGCAGAAAGGGTGGTAGAAGAGGAA
GAAGGCTTTAAGCTGTCTTGTTTGTCCGATTGTCTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAA
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