DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PARL1 (UDP-N-acetylmuramate--L-alanine ligase OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 41/115 (35.65%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 648
            K+TT S++A +L   G D T I G  +  +   +   GGG+  V+EADE DG F+ L  ++A+VTN+D EH+D +   DA K  F  F++ +   G  V+C D    ++L+ +++
Sbjct:  119 KTTTTSLVAAILDKAGLDPTVINGGIINAYGTNARL-GGGEWMVVEADESDGTFVKLPATIAIVTNIDPEHLDYYGSFDAAKDAFLAFVENVPFYGAAVMCIDHPEVQALIGRVR 232          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_METFK (UDP-N-acetylmuramate--L-alanine ligase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S++A +L   G D T ++G  + +    +   G G+  V EADE D  FL L+P ++VVTN+D +H+D +  D + +K  F  FL+++   G  V+C D    R++L QI +
Sbjct:  116 KTTTTSLIASILAEAGMDPTFVIGGRL-EASGSNARLGTGEYIVAEADESDASFLHLTPIISVVTNIDADHMDTYGHDFERLKGAFVEFLQRLPFYGMAVVCIDDPNVRAILPQISK 231          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BORGA (UDP-N-acetylmuramate--L-alanine ligase OS=Borrelia garinii GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 37/117 (31.62%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQD 654
            K+TT + L  +   +G +   IVG+ V  F D S   G    F++E  EY   FL  SP++ ++TN+D+EHVD F++ +A++  F +++  ++  G L+I  D +    +  QI ++
Sbjct:  125 KTTTTAFLGILFDKLGLNPNVIVGSSVKDFGDNSAIAGISDIFIVETCEYKKHFLYFSPNMLILTNVDYEHVDFFKNYEALEDAFLQYINNLKKNGILIINSDDKNLLKIKSQINRE 241          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_AZOC5 (UDP-N-acetylmuramate--L-alanine ligase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L   G D T I G  +  +   +   G G   V+EADE DG FL L   VA++TN+D EH+D F+  D V+  FR F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVATLLDKGGFDPTVINGGIINAYGTNARL-GAGDWMVVEADESDGTFLKLPAEVAIITNIDPEHLDHFKTFDKVQEAFRTFVENVPFYGFAVMCIDHPVVQALVGRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_AQUAE (UDP-N-acetylmuramate--L-alanine ligase OS=Aquifex aeolicus GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.586e-13
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVI 603
            K+TT SM+A +L   G + T I+G  + +    +   G G+  V EADE DG FL L P+VAV+TN+D EH+D +E+ + VK  F +F+  +   G  V+
Sbjct:  117 KTTTTSMIAEILINAGLEPTVIIGGRLKRLGTNAKL-GRGELLVSEADESDGSFLKLQPAVAVITNVDKEHLDFYENFERVKEAFEQFMNSVPFYGFAVV 215          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PELPB (UDP-N-acetylmuramate--L-alanine ligase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 39/116 (33.62%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT +M+A +L    +  T ++G  +  +  GS   G GK  V+EADEYD  FL L+P++AVV +L+ EH+D +   D +K  F  F  ++   G ++ C D    R ++ ++ +
Sbjct:  118 KTTTTAMIATMLIESDESPTVMIGG-ISDYLKGSTVVGEGKYMVIEADEYDRAFLKLTPTIAVVNSLESEHMDTYGTLDELKEAFVAFANKVPFYGRVICCVDWPEIRKIMPKMNR 232          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_KINRD (UDP-N-acetylmuramate--L-alanine ligase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 633
            K+TT+SMLA  L A G D +  +G  +    DG    G G  FV EADE DG F   +P V VVTN++ +H+D +   +A  + F  F+ +++ GG LV C D   + +L
Sbjct:  129 KTTTSSMLAVALTAAGLDPSYAIGGELTGGDDGGARDGSGP-FVAEADESDGSFRAYAPVVDVVTNVEPDHLDHYGTAEAFAAAFEEFVDRLQPGGLLVACADDPGSAAL 237          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_FLAPJ (UDP-N-acetylmuramate--L-alanine ligase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNF-VLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQI 579
            K+TT+S+L ++L   G D+TA +G  V  +    I  G GK   V+EADE+D  FL L P++A VT++D +H+DI+ D+ A+K+ F+ F  ++
Sbjct:  122 KTTTSSILGHILYESGADVTAFIGGIVENYNSNLI--GSGKTVTVVEADEFDRSFLHLYPNIACVTSMDADHLDIYGDDAAIKASFKEFADKV 212          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CHLPD (UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 38/116 (32.76%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT +M+A +L   G+  T ++G  V  +  GS   G GK  V+EADE+D  FL L+P++AV+ +L+ EH+D +   + ++  F  F  ++   G ++ C D    R L+  + +
Sbjct:  118 KTTTTAMIATMLIEAGESPTVMIGG-VSDYLKGSTVVGSGKYLVIEADEFDRAFLKLTPTIAVINSLESEHMDTYGTIEELRKAFIAFANKVPFYGRVICCVDWPEIRKLIPHLNR 232          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CHLL2 (UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 38/116 (32.76%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT +M+A +L   G+  T ++G  V  +  GS   G GK  V+E+DEYD  FL L+P++A+V +L+ EH+D +   + +K+ F  F  ++   G ++ C D    R ++  + +
Sbjct:  118 KTTTTAMIATMLMESGESPTVMIGG-VSDYLGGSTVVGEGKYMVIESDEYDRAFLKLTPTIALVNSLESEHMDTYGTLEELKNAFIAFADKVPFYGRVICCVDWPEIRKIIPMLNR 232          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_PARL19.586e-1335.65UDP-N-acetylmuramate--L-alanine ligase OS=Parvibac... [more]
MURC_METFK9.586e-1335.90UDP-N-acetylmuramate--L-alanine ligase OS=Methylob... [more]
MURC_BORGA9.586e-1331.62UDP-N-acetylmuramate--L-alanine ligase OS=Borrelia... [more]
MURC_AZOC59.586e-1336.07UDP-N-acetylmuramate--L-alanine ligase OS=Azorhizo... [more]
MURC_AQUAE9.586e-1340.00UDP-N-acetylmuramate--L-alanine ligase OS=Aquifex ... [more]
MURC_PELPB1.252e-1233.62UDP-N-acetylmuramate--L-alanine ligase OS=Pelodict... [more]
MURC_KINRD1.252e-1239.09UDP-N-acetylmuramate--L-alanine ligase OS=Kineococ... [more]
MURC_FLAPJ1.252e-1240.86UDP-N-acetylmuramate--L-alanine ligase OS=Flavobac... [more]
MURC_CHLPD1.252e-1232.76UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobi... [more]
MURC_CHLL21.252e-1232.76UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobi... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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