DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CHLCH (UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobium chlorochromatii (strain CaD3) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 37/116 (31.90%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT +M+A +L   G+  T ++G  +  +  GS   G GK  V+EADEYD  FL L+P++A++ +L+ EH+D +   + +K  F  F  ++   G ++ C D    R ++  + +
Sbjct:  118 KTTTTAMIATMLLEAGESPTVMIGG-ISDYLKGSTVVGEGKYMVIEADEYDRAFLKLTPTIAILNSLESEHMDTYGTLEELKQAFITFANKVPFYGRVICCVDWAEIRKIIPSLNR 232          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CHLAD (UDP-N-acetylmuramate--L-alanine ligase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=murC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT++M A  L+  G     ++GA VP     + +       V+EADEYD  FL L+P++A+VTN++W+H DI+       + F  F  Q+R    L++C D
Sbjct:  112 KTTTSAMTALALRGGGVACGFLIGADVPALGGSAQWGDPTAPLVIEADEYDRVFLALTPAMAIVTNVEWDHPDIYPTATDYAAAFAEFAAQVRDRRRLLLCAD 214          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCGI (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium gilvum (strain PYR-GCK) GN=murC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K++T SM+   L+  G D +  VG  + Q    +  +G G  FV EADE DG  L  SP VAVVTN++ +H+D +   +   ++F +F+ +I+  G LV+C D   A +L ++
Sbjct:  129 KTSTTSMIIVALQHCGFDPSFAVGGDLGQAGTNA-HHGSGSTFVAEADESDGSLLEYSPDVAVVTNIEADHLDFYGTVENYTAVFDQFVDRIKPVGALVVCVDDPGAAALAER 240          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_ERYLH (UDP-N-acetylmuramate--L-alanine ligase OS=Erythrobacter litoralis (strain HTCC2594) GN=murC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 43/122 (35.25%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L     D T I G  + Q+   +   G  +  V+EADE DG FL L  ++AVVTN+D EH+D + D D VK  F  F+  +   G  ++C D    ++++ Q++    + Y
Sbjct:  119 KTTTTSMIAALLDCGDIDPTVINGGIIEQYGSNARL-GDSEWMVVEADESDGSFLRLDGTIAVVTNIDPEHLDHYGDFDGVKRAFLDFIHNVPFYGAAILCIDHPEVQAVIGQVRDRRVMTY 239          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DESMR (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=murC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 42/116 (36.21%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S+LA +    G D T I+G  +  +  G+   G G+  + EADE DG FL LSP  +VVTN+D +H+D ++  +A+   F  FL  I   G  V+C D      +L ++ +
Sbjct:  116 KTTTTSLLATIFTEAGYDPTVIIGGRLNAYGAGARL-GQGEYLIAEADESDGSFLCLSPIASVVTNVDADHLDHYDGIEAIDDAFVDFLNNIPFYGVNVVCLDDPGVARILPRVNR 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCTU (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium tuberculosis GN=murC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAV+TN++ +H+D +   +A  ++F  F+++I  GG LV+C D
Sbjct:  126 KTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNA-HHGSGDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTD 227          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCTA (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=murC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAV+TN++ +H+D +   +A  ++F  F+++I  GG LV+C D
Sbjct:  126 KTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNA-HHGSGDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTD 227          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCBT (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=murC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAV+TN++ +H+D +   +A  ++F  F+++I  GG LV+C D
Sbjct:  126 KTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNA-HHGSGDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTD 227          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCBP (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=murC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAV+TN++ +H+D +   +A  ++F  F+++I  GG LV+C D
Sbjct:  126 KTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNA-HHGSGDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTD 227          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCBO (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium bovis GN=murC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAV+TN++ +H+D +   +A  ++F  F+++I  GG LV+C D
Sbjct:  126 KTTTTSMLIVALQHCGLDPSFAVGGELGEAGTNA-HHGSGDCFVAEADESDGSLLQYTPHVAVITNIESDHLDFYGSVEAYVAVFDSFVERIVPGGALVVCTD 227          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_CHLCH1.252e-1231.90UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobi... [more]
MURC_CHLAD1.252e-1235.92UDP-N-acetylmuramate--L-alanine ligase OS=Chlorofl... [more]
MURC_MYCGI1.635e-1236.28UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_ERYLH1.635e-1235.25UDP-N-acetylmuramate--L-alanine ligase OS=Erythrob... [more]
MURC_DESMR1.635e-1236.21UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]
MURC_MYCTU2.135e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCTA2.135e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCBT2.135e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCBP2.135e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCBO2.135e-1238.83UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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