DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_METPP (UDP-N-acetylmuramate--L-alanine ligase OS=Methylibium petroleiphilum (strain PM1) GN=murC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S++A VL   G D T ++G  +      S   G G   V+EADE D  FL L P ++VVTN+D +H+D +  D   +K  F  FL ++   G  +ICGD    RS++  I +
Sbjct:  116 KTTTTSLVASVLAEAGLDPTFVIGGRLNSAGANSRL-GAGDYIVVEADESDASFLNLLPVLSVVTNIDADHMDTYGHDLGRLKHAFLEFLHRMPFYGAAIICGDDPGVRSIIPMISR 231          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BART1 (UDP-N-acetylmuramate--L-alanine ligase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=murC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT SM+A +L A   D   I G  +  +   S   G G   ++EADE DG FL L   +AVVTN+D EH+D +   DAV++ FR+F++ +   G  V+C D    +SL  +I
Sbjct:  118 KTTTTSMVAALLDAGHFDPVVINGGIINAYGTNSRT-GEGDWMIVEADESDGTFLKLPADIAVVTNIDAEHLDHYGSFDAVRTAFRQFVENVPFYGFAVLCVDHPEVQSLAGRI 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PARUW (UDP-N-acetylmuramate--L-alanine ligase OS=Protochlamydia amoebophila (strain UWE25) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 52/143 (36.36%), Postives = 73/143 (51.05%), Query Frame = 1
Query:  271 ICTRQARSQT-----RKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFED-EDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGV 681
            + TRQ +S        K+TT+S+LA  L     D +  VG  +PQF   +  +G G  FV EADE D  FL   P  A+VTN+D +H++ +E+ ED +   F++F  QI    HL  CGD             DT LK+  G+
Sbjct:   97 LLTRQKKSLAVTGTHGKTTTSSLLATTLLEANCDSSFAVGGIIPQFQSNAK-HGLGDLFVFEADESDRSFLKYFPYGAIVTNIDNDHLNSYENSEDVLIQSFQQFTSQISSPNHLFWCGD-------------DTHLKFLNGI 225          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MESSB (UDP-N-acetylmuramate--L-alanine ligase OS=Mesorhizobium sp. (strain BNC1) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 48/139 (34.53%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGH 720
            K+TT SM+A +L A G D T I G  +  +   +   G G   V+EADE DG FL L   +AV+TN+D EH+D +   D V+  FR+F++ +   G  V+C D    ++L+ +I+    + Y      N  +D+  + H
Sbjct:  118 KTTTTSMVAALLDAGGLDPTVINGGIINVYGTNARM-GEGDWMVVEADESDGTFLKLPADIAVITNIDPEHLDHYGSFDKVREAFRQFVENVPFYGLGVMCIDHPEVQALVSRIEDRRVVTYG----ENLQADVRFENH 251          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CLOBM (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML++V      D T +VG ++    +G++  G    F+ EA EY   FL   P + V+ N+D +H+D ++D D +K+ F +F+K I   G+LV  G+ +  +S++ +
Sbjct:  122 KTTTTSMLSHVALKANVDPTILVGGNL-DIINGNVRVGESDFFITEACEYKSSFLKFFPYIGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKE 233          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CLOBL (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML++V      D T +VG ++    +G++  G    F+ EA EY   FL   P + V+ N+D +H+D ++D D +K+ F +F+K I   G+LV  G+ +  +S++ +
Sbjct:  122 KTTTTSMLSHVALKANVDPTILVGGNL-DIINGNVRVGESDFFITEACEYKSSFLKFFPYIGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKE 233          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CLOBK (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum (strain Okra / Type B1) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML++V      D T +VG ++    +G++  G    F+ EA EY   FL   P + V+ N+D +H+D ++D D +K+ F +F+K I   G+LV  G+ +  +S++ +
Sbjct:  122 KTTTTSMLSHVALKANVDPTILVGGNL-DIINGNVRVGESDFFITEACEYKSSFLKFFPYIGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKE 233          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CLOBH (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML++V      D T +VG ++    +G++  G    F+ EA EY   FL   P + V+ N+D +H+D ++D D +K+ F +F+K I   G+LV  G+ +  +S++ +
Sbjct:  122 KTTTTSMLSHVALKANVDPTILVGGNL-DIINGNVRVGESDFFITEACEYKSSFLKFFPYIGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKE 233          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CLOB1 (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 38/113 (33.63%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML++V      D T +VG ++    +G++  G    F+ EA EY   FL   P + V+ N+D +H+D ++D D +K+ F +F+K I   G+LV  G+ +  +S++ +
Sbjct:  122 KTTTTSMLSHVALKANVDPTILVGGNL-DIINGNVRVGESDFFITEACEYKSSFLKFFPYIGVILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKE 233          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRUSU (UDP-N-acetylmuramate--L-alanine ligase OS=Brucella suis GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARM-GDGDWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDRRIITY 238          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_METPP2.135e-1237.61UDP-N-acetylmuramate--L-alanine ligase OS=Methylib... [more]
MURC_BART12.135e-1239.47UDP-N-acetylmuramate--L-alanine ligase OS=Bartonel... [more]
MURC_PARUW2.789e-1236.36UDP-N-acetylmuramate--L-alanine ligase OS=Protochl... [more]
MURC_MESSB2.789e-1234.53UDP-N-acetylmuramate--L-alanine ligase OS=Mesorhiz... [more]
MURC_CLOBM2.789e-1233.63UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_CLOBL2.789e-1233.63UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_CLOBK2.789e-1233.63UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_CLOBH2.789e-1233.63UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_CLOB12.789e-1233.63UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_BRUSU2.789e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Brucella... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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