DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRUSI (UDP-N-acetylmuramate--L-alanine ligase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARM-GDGDWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRUO2 (UDP-N-acetylmuramate--L-alanine ligase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARM-GDGDWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRUME (UDP-N-acetylmuramate--L-alanine ligase OS=Brucella melitensis GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARM-GDGDWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRUMB (UDP-N-acetylmuramate--L-alanine ligase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARM-GDGDWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRUC2 (UDP-N-acetylmuramate--L-alanine ligase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARM-GDGDWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRUAB (UDP-N-acetylmuramate--L-alanine ligase OS=Brucella abortus GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARM-GDGDWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRUA2 (UDP-N-acetylmuramate--L-alanine ligase OS=Brucella abortus (strain 2308) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARM-GDGDWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRUA1 (UDP-N-acetylmuramate--L-alanine ligase OS=Brucella abortus (strain S19) GN=murC PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 45/122 (36.89%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSLVAALLDAGHLDPTVINGGIINAYGTNARM-GDGDWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVSRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PSEPW (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas putida (strain W619) GN=murC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 657
            K+TT S+LA V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+  +E D + +K  F  FL  +   G  V+C D    R +L Q+K+ T
Sbjct:  127 KTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQL-GTSRYLIAEADESDASFLHLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVREILPQVKRPT 244          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PSEPK (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas putida (strain KT2440) GN=murC PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 45/119 (37.82%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 657
            K+TT S+LA V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+  +E D + +K  F  FL  +   G  V+C D    R +L Q+K+ T
Sbjct:  127 KTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQL-GTSRYLIAEADESDASFLHLQPMVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVREILPQVKRPT 244          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_BRUSI2.789e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Brucella... [more]
MURC_BRUO22.789e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Brucella... [more]
MURC_BRUME2.789e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Brucella... [more]
MURC_BRUMB2.789e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Brucella... [more]
MURC_BRUC22.789e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Brucella... [more]
MURC_BRUAB2.789e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Brucella... [more]
MURC_BRUA22.789e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Brucella... [more]
MURC_BRUA12.789e-1236.89UDP-N-acetylmuramate--L-alanine ligase OS=Brucella... [more]
MURC_PSEPW3.643e-1237.82UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_PSEPK3.643e-1237.82UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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