DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_THETN (UDP-N-acetylmuramate--L-alanine ligase OS=Thermoanaerobacter tengcongensis GN=murC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT S+++ +L   G D T +VG  +     G++  G  + FV EA EY   FL   P +AV+ N+D +H+D F++ D +K  FR+F   +   G +V C D
Sbjct:  120 KTTTTSLISVILDRAGYDPTVLVGGEIDAI-GGNVRVGKSEYFVTEACEYTDSFLKFYPYIAVILNVDSDHLDYFKNIDNIKQSFRQFASLVPSDGFVVACKD 221          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CLOTH (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=murC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT SM++ ++     D T  +G  +     G+   G  K FV EA EY   FL   P +AVV N++ +H+D F+D + +K+ F +F++ +   G++V C D Q   S+L  +
Sbjct:  124 KTTTTSMISLIMLKSALDPTIHIGGELDAI-GGNTRIGSNKYFVAEACEYVESFLKFHPYLAVVLNIEADHLDYFKDIEHIKNAFLKFIRLVPENGYVVACADDQNVLSILKDV 236          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CLOB6 (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=murC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 37/113 (32.74%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML++V      D T +VG ++    +G++  G    F+ EA EY   FL   P +  + N+D +H+D ++D D +K+ F +F+K I   G+LV  G+ +  +S++ +
Sbjct:  122 KTTTTSMLSHVALKANVDPTILVGGNL-DIINGNVRVGKSDFFITEACEYKSSFLKFFPYIGAILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKE 233          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_SPHWW (UDP-N-acetylmuramate--L-alanine ligase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L A G D T I G  +  +   +   G     V+EADE DG FL L  ++AVVTN+D EH+D +   D VK  F  F++ +   G  ++C D    ++++ +++    + Y
Sbjct:  119 KTTTTSMVAALLDAGGVDPTVINGGIINSYGSNARL-GASDWMVVEADESDGSFLRLDGTIAVVTNIDPEHLDHYGSFDKVKDCFVEFVENVPFYGAALLCIDHPEVQAIIPRVRDRKVVTY 239          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_SALAI (UDP-N-acetylmuramate--L-alanine ligase OS=Salinispora arenicola (strain CNS-205) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 38/125 (30.40%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGG 678
            K+TT SM+  VL+  G D + ++G  + +   G+  +G G+ FV+EADE D  FL   P V+++TN++ +H++ + D   +++ F  F +     G +V C D   +R L + ++ +    Y+ G
Sbjct:  131 KTTTTSMVTMVLQQAGVDPSFVIGGEISEVGSGA-HHGTGEYFVVEADESDRSFLIYRPFVSIITNIEADHLNTYGDLANLEAAFADFARLTDPDGFVVTCADDAGSRRLAETLRAEGRRVYTYG 254          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RHOE4 (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K++T SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L   P+V VVTN++ +H+D F   +A   +F  F+ ++R GG L+ C D   +  L  +I
Sbjct:  124 KTSTTSMLVVALQHCGFDPSFAVGGELNEAGTNA-HHGSGDVFVAEADESDGSLLQYDPNVIVVTNIEADHLDYFGSVEAYVKVFDDFVDKLRPGGLLIACLDDPGSADLAKRI 236          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_NOVAD (UDP-N-acetylmuramate--L-alanine ligase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 45/138 (32.61%), Postives = 75/138 (54.35%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQG 717
            K+TT SM+A +L A G D T I G  +  +   +   G     V+EADE DG FL L  ++AVVTN+D EH+D +   + VKS F  F++ +   G  ++C D    ++++ +++    + Y      +  +D+ G+G
Sbjct:  119 KTTTTSMVACLLDAGGIDPTVINGGIINSYGSNARL-GDSDWMVVEADESDGSFLRLDGTLAVVTNIDPEHLDHYGSFERVKSAFVEFIENVPFYGAAMLCIDHPEVQAIIPKVRDRRVVTYG----FSAQADVRGEG 251          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_HYDS0 (UDP-N-acetylmuramate--L-alanine ligase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT SM++++    G D T ++G  +  F   ++  G  +  + EADE DG FL L+  + VVTN+D EH+  ++D + +K  F +F+  +   G  V+  D    RS+L +I
Sbjct:  117 KTTTTSMISHISHIAGLDPTVLIGGILQTFGSNAVL-GKSELLISEADESDGSFLKLNSVINVVTNIDKEHIGYYKDYEDIKEAFVKFINNVPFYGASVVNIDDTGVRSILSKI 229          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_GRAFK (UDP-N-acetylmuramate--L-alanine ligase OS=Gramella forsetii (strain KT0803) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 35/100 (35.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVI 603
            K+TT ++L ++LK  G  +TA +G  + +    ++   G K  V+EADE+D  FL LSP++A +T++D +H+DI+ D+  ++  FR F  ++   G L +
Sbjct:  125 KTTTTAILGHLLKETGAKVTAFLGG-ISEDIQSNLIMQGDKVVVVEADEFDRSFLKLSPNLAAITSMDADHLDIYGDKSELEKSFREFAAKVPEDGKLFV 223          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_GRABC (UDP-N-acetylmuramate--L-alanine ligase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A VL+A   D T I G  +  +   +   G G+  V+EADE DG FL L   +AVVTN+D EH+D +   +A+++ +++F+  I   G  V+C D    + ++ Q+     + Y
Sbjct:  119 KTTTTSLIAAVLEAAQLDPTVINGGIINAYGTNTRL-GAGEWMVVEADESDGSFLRLPAVIAVVTNMDPEHLDHWGTAEAMEAGYQQFVSNIPFYGFAVLCIDHPTVQKMIPQLSDHRIITY 239          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_THETN8.115e-1235.92UDP-N-acetylmuramate--L-alanine ligase OS=Thermoan... [more]
MURC_CLOTH8.115e-1233.33UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_CLOB68.115e-1232.74UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_SPHWW1.060e-1134.43UDP-N-acetylmuramate--L-alanine ligase OS=Sphingom... [more]
MURC_SALAI1.060e-1130.40UDP-N-acetylmuramate--L-alanine ligase OS=Salinisp... [more]
MURC_RHOE41.060e-1135.96UDP-N-acetylmuramate--L-alanine ligase OS=Rhodococ... [more]
MURC_NOVAD1.060e-1132.61UDP-N-acetylmuramate--L-alanine ligase OS=Novosphi... [more]
MURC_HYDS01.060e-1133.33UDP-N-acetylmuramate--L-alanine ligase OS=Hydrogen... [more]
MURC_GRAFK1.060e-1135.00UDP-N-acetylmuramate--L-alanine ligase OS=Gramella... [more]
MURC_GRABC1.060e-1134.43UDP-N-acetylmuramate--L-alanine ligase OS=Granulib... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
back to top