DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RICB8 (UDP-N-acetylmuramate--L-alanine ligase OS=Rickettsia bellii (strain OSU 85-389) GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  274 CTRQARSQTRKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVL-EADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            C+        K+TT S++A + +A G   T I G  +      +  Y G  N+++ EADE D  F+ +  ++A++TN+D EH+D ++D D + + FR F+  +   G  V C D +  R L++ I +   + Y
Sbjct:  114 CSVAVSGSHGKTTTTSLVACLFEAAGLHPTVINGGIINNRSTNA--YLGSSNYLIAEADESDATFISIPSTIAIITNIDPEHLDYYKDFDTLINAFRSFITNLPFYGFAVCCIDHKIVRELVNNITERKVITY 244          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_ORITB (UDP-N-acetylmuramate--L-alanine ligase OS=Orientia tsutsugamushi (strain Boryong) GN=murC PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 37/114 (32.46%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT +++A + +A G   T I G  +      + + G G  F+ EADE D  F+ +  ++AV+TN+D EH+D +++ D + S FR+F+  +   G  V C D    ++L+ +I
Sbjct:  124 KTTTTALIACIFEACGLHPTVITGGIMNNRATNA-YLGDGDYFIAEADESDATFIKIPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQNLIAKI 236          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_GEOMG (UDP-N-acetylmuramate--L-alanine ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDE-DAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT SM+A  L   G D T ++G  +      +   G G+  V EADE DG FL LSP++AVVTN+D +H+D +    + +K  F  F+ +I   G  V+C + +    +L ++K+
Sbjct:  116 KTTTTSMVATALTHGGIDPTIVIGGKLNTLGTNAKL-GQGQFLVAEADESDGSFLKLSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLEDRNIAEILPRVKK 231          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_COREF (UDP-N-acetylmuramate--L-alanine ligase OS=Corynebacterium efficiens GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 633
            K++T SM    L+A G D +  +G  + +    +   G G+ FV EADE D   L  +P +AVVTN++ +H+D F+  +A   +F  F  ++  GG LV+C D   A +L
Sbjct:  134 KTSTTSMAVVALQAAGMDPSFAIGGQLNKAGTNA-HQGTGEAFVAEADESDASLLRYTPEIAVVTNIEPDHLDFFKTPEAYFQVFEDFADRLTPGGTLVVCLDDPGAAAL 242          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CAUSK (UDP-N-acetylmuramate--L-alanine ligase OS=Caulobacter sp. (strain K31) GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 648
            K+TT SM+A +L A   D T + G  +  +   +   G G   V+EADE DG FL L  +VA+VTN+D EH+D +   DAVK  F+ F++ I   G   +C D    ++L  +I+
Sbjct:  123 KTTTTSMVAALLDAGALDPTVVNGGIINAYGTNAKV-GEGDWIVVEADESDGSFLKLKSTVAIVTNIDAEHLDHWGTFDAVKKGFQDFIENIPFYGFAAVCTDHPEVQALTARIE 236          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BORPE (UDP-N-acetylmuramate--L-alanine ligase OS=Bordetella pertussis GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 636
            K+TT S++A VL A G D T ++G  +      +   G G+  V+EADE D  FL L P +A+VTN+D +H+D +  D   +KS F  F +++   G  ++C D    R ++
Sbjct:  116 KTTTTSLVASVLAAGGLDPTFVIGGRLTS-AGANARLGQGEYIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAILCADDANVREIM 226          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BORPA (UDP-N-acetylmuramate--L-alanine ligase OS=Bordetella parapertussis GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 636
            K+TT S++A VL A G D T ++G  +      +   G G+  V+EADE D  FL L P +A+VTN+D +H+D +  D   +KS F  F +++   G  ++C D    R ++
Sbjct:  116 KTTTTSLVASVLAAGGLDPTFVIGGRLTS-AGANARLGQGEYIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAILCADDANVREIM 226          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BORBR (UDP-N-acetylmuramate--L-alanine ligase OS=Bordetella bronchiseptica GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 636
            K+TT S++A VL A G D T ++G  +      +   G G+  V+EADE D  FL L P +A+VTN+D +H+D +  D   +KS F  F +++   G  ++C D    R ++
Sbjct:  116 KTTTTSLVASVLAAGGLDPTFVIGGRLTS-AGANARLGQGEYIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAILCADDANVREIM 226          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BARQU (UDP-N-acetylmuramate--L-alanine ligase OS=Bartonella quintana GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT SM+A +L A   D   I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D +    AV+  FR+F++ +   G  V+C D    +SL  +I
Sbjct:  118 KTTTTSMIAALLDAGRFDPMVINGGIINAYGTNARM-GSGDWMVVEADESDGTFLKLPADIAVVTNIDREHLDHYGSFCAVREAFRQFVENVPFYGFAVLCLDHPEVQSLASRI 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PSEF5 (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=murC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 657
            K+TT S+LA V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+  ++ D + +K  F  FL  +   G  V+C D    R +L Q+K+ T
Sbjct:  127 KTTTTSLLASVFAAGGLDPTFVIGGRLNAAGTNAQL-GTSRYLIAEADESDASFLHLQPLVAVVTNIDADHMATYDGDFNKLKKTFVDFLHNLPFYGLAVMCLDDPVVREILPQVKRPT 244          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_RICB81.808e-1130.08UDP-N-acetylmuramate--L-alanine ligase OS=Ricketts... [more]
MURC_ORITB1.808e-1132.46UDP-N-acetylmuramate--L-alanine ligase OS=Orientia... [more]
MURC_GEOMG1.808e-1135.90UDP-N-acetylmuramate--L-alanine ligase OS=Geobacte... [more]
MURC_COREF1.808e-1135.45UDP-N-acetylmuramate--L-alanine ligase OS=Coryneba... [more]
MURC_CAUSK1.808e-1138.26UDP-N-acetylmuramate--L-alanine ligase OS=Caulobac... [more]
MURC_BORPE1.808e-1135.71UDP-N-acetylmuramate--L-alanine ligase OS=Bordetel... [more]
MURC_BORPA1.808e-1135.71UDP-N-acetylmuramate--L-alanine ligase OS=Bordetel... [more]
MURC_BORBR1.808e-1135.71UDP-N-acetylmuramate--L-alanine ligase OS=Bordetel... [more]
MURC_BARQU1.808e-1138.60UDP-N-acetylmuramate--L-alanine ligase OS=Bartonel... [more]
MURC_PSEF52.361e-1136.97UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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