DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_LEPCP (UDP-N-acetylmuramate--L-alanine ligase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=murC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S++  VL   G D T ++G  +      S   G G   V+EADE D  FL L P ++V+TN+D +H+D +  D   +K  F  FL ++   G  ++CGD    RS++  I +
Sbjct:  116 KTTTTSLVTSVLAEAGLDPTFVIGGKLNSAGANSAL-GKGDYIVVEADESDASFLNLLPVLSVITNIDADHMDTYGHDFARLKQAFVEFLHKMPFYGAAILCGDDPGVRSIIPMISR 231          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_LAWIP (UDP-N-acetylmuramate--L-alanine ligase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=murC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 37/116 (31.90%), Postives = 62/116 (53.45%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S+ A V    G D T ++G  +  +   +   G G+  + EADE DG FL L P + VVTN+D +H+D +   + ++  F  F+  +   G  V+CGD    + +L ++ +
Sbjct:  116 KTTTTSLTATVFDTAGFDPTVVIGGVLNAY-GANARLGQGQYLIAEADESDGSFLLLLPIINVVTNIDLDHLDYYRSFEEIEHAFVTFMNNVPFYGMNVVCGDDPGVQRVLPRVNR 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_AZOVD (UDP-N-acetylmuramate--L-alanine ligase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=murC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 657
            K+TT S++A V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+D +E D   +K  F  FL  +   G  V+C D    R +L  + + T
Sbjct:  129 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GSSRYLIAEADESDASFLHLQPMVAVVTNIDADHMDTYEGDFSRLKKTFVDFLHNLPFYGLAVLCVDDPVVREILPLVARPT 246          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RHORT (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=murC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 40/122 (32.79%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A G D T I G  +      + + G G+  V+EADE DG F  L  ++++VTN+D EH+D +   D V+  FR F+  +   G   +C D    ++++ Q++    + Y
Sbjct:  119 KTTTTSLVAQLLDAAGLDPTVINGG-ILNARGTNAYLGTGEWMVVEADESDGTFTKLPATISLVTNIDPEHLDFYGTFDKVREAFRAFIHNLPFYGFACMCIDHPEVQAMIPQLQDRKIITY 239          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_NITEU (UDP-N-acetylmuramate--L-alanine ligase OS=Nitrosomonas europaea GN=murC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 40/115 (34.78%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT S++A +L   G D T ++G  +    D     G G+  V+EADE D  FL L P + VVTN+D +H+  +E D + +K  F  F++ +   G  V+C D    R ++  I
Sbjct:  116 KTTTTSLVASILAEAGQDPTFVIGGKLKTV-DSHARLGKGEFIVVEADESDASFLYLQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIEHLPFYGMAVLCVDDPHVREIISMI 229          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_GLOVI (UDP-N-acetylmuramate--L-alanine ligase OS=Gloeobacter violaceus GN=murC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCAR 627
            K+TT+S++A +L   G D T +VG  V +   G+   G G + V E DE DG  +  SP VAVVTN++ +H+D + + + +   F+++  Q RV   +V C D Q  R
Sbjct:  122 KTTTSSLIAVMLYHCGLDPTVVVGGEVDEL-GGNARLGSGPHLVAEVDESDGSLVLFSPEVAVVTNIEGDHLDHYANLEQIVEAFQQYANQARV---VVGCLDCQAVR 225          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CLOD6 (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium difficile (strain 630) GN=murC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 38/122 (31.15%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K++T SML+ + +    D T +VG ++     G++  G   +F+ EA EY   FL  +P +++V N++ +H+D F   D +K+ F +F K +   G+ +I GD +    +L  +K  T +KY
Sbjct:  113 KTSTTSMLSTIFEYADLDPTILVGGNLSMI-GGNVKIGNSNHFITEACEYVDSFLNFNPKISIVLNVEEDHLDYFSGIDEIKASFNKFGKLLPPEGYFIINGDDENIDDILYDVKA-TIIKY 232          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BORA1 (UDP-N-acetylmuramate--L-alanine ligase OS=Bordetella avium (strain 197N) GN=murC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 636
            K+TT S++A VL A G D T ++G  +      +   G G+  V+EADE D  FL L P +A++TN+D +H+D +  D   +KS F  F +++   G  V+C D    R ++
Sbjct:  116 KTTTTSLVASVLAAGGLDPTFVIGGRLNS-AGANAQLGQGEFIVVEADESDASFLNLLPVMAIITNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCADDANVREIM 226          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RICTY (UDP-N-acetylmuramate--L-alanine ligase OS=Rickettsia typhi GN=murC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 38/132 (28.79%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  274 CTRQARSQTRKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            C+        K+TT S++A + +A G   T I G  +      + + G     + EADE D  F+ +  ++A++TN+D EH+D ++D + +   FR F+  +   G  V C D +  R L+D I +   + Y
Sbjct:  114 CSVAVSGSHGKTTTTSLIACLFEAAGLYPTVINGGIINN-KSTNAYLGSSNYLIAEADESDATFIHIPSTIAIITNIDPEHLDYYQDFEILIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDDITERKIITY 244          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RICPR (UDP-N-acetylmuramate--L-alanine ligase OS=Rickettsia prowazekii GN=murC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 38/132 (28.79%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  274 CTRQARSQTRKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            C+        K+TT S++A + +A G   T I G  +      + + G     + EADE D  F+ +  ++A++TN+D EH+D ++D + +   FR F+  +   G  V C D +  R L+D I +   + Y
Sbjct:  114 CSVAVSGSHGKTTTTSLIACLFEAAGLCPTVINGGIINN-KSTNAYLGSSNYLIAEADESDATFIHIPSTIAIITNIDPEHLDYYQDFEILIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDDITERKIITY 244          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_LEPCP2.361e-1135.04UDP-N-acetylmuramate--L-alanine ligase OS=Leptothr... [more]
MURC_LAWIP2.361e-1131.90UDP-N-acetylmuramate--L-alanine ligase OS=Lawsonia... [more]
MURC_AZOVD2.361e-1136.13UDP-N-acetylmuramate--L-alanine ligase OS=Azotobac... [more]
MURC_RHORT3.084e-1132.79UDP-N-acetylmuramate--L-alanine ligase OS=Rhodospi... [more]
MURC_NITEU3.084e-1134.78UDP-N-acetylmuramate--L-alanine ligase OS=Nitrosom... [more]
MURC_GLOVI3.084e-1137.04UDP-N-acetylmuramate--L-alanine ligase OS=Gloeobac... [more]
MURC_CLOD63.084e-1131.15UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_BORA13.084e-1135.71UDP-N-acetylmuramate--L-alanine ligase OS=Bordetel... [more]
MURC_RICTY4.027e-1128.79UDP-N-acetylmuramate--L-alanine ligase OS=Ricketts... [more]
MURC_RICPR4.027e-1128.79UDP-N-acetylmuramate--L-alanine ligase OS=Ricketts... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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