DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_ANADE (UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=murC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-14
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT SM A++L   G D TA+VG  V  F   +   G G   V+EADE DG FL + P++A+VTN+D EH+D ++  DA++  F  F+ ++   G  ++C D    +S+L  +++
Sbjct:  119 KTTTTSMAAHLLAHAGLDPTAVVGGKVNAFGSNAKL-GKGDYMVVEADESDGSFLRIPPTIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCIDHPTVQSILPDVEK 233          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_ANAD2 (UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=murC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.338e-14
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT SM A++L   G D TA+VG  V  F   +   G G   V+EADE DG FL + P++A+VTN+D EH+D ++  DA++  F  F+ ++   G  ++C D    +S+L  +++
Sbjct:  119 KTTTTSMAAHLLAHAGLDPTAVVGGKVNAFGSNAKL-GKGDYMVVEADESDGSFLRIPPTIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCIDHPTVQSILPDVEK 233          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCVP (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=murC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT SML   L+  G D +  VG  + +    +  +G G +FV EADE DG  L   P + VVTN++ +H+D F   +A   +F RF  +I  GG LV+C D   AR+L +++
Sbjct:  130 KTTTTSMLIVALQHSGFDPSFAVGGDLGEAGTNA-HHGSGSSFVAEADESDGSLLEYRPDIVVVTNIEADHLDFFGSVEAYTEVFDRFAGRIDPGGALVVCVDDPGARALAERL 242          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DESVV (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=murC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S+ A +    G D T I+G  +  +   +   G G+  + EADE DG FL L P V VVTN+D +HVD +  +  +   F  F+ ++   G  V+CGD    R LL Q+K+
Sbjct:  116 KTTTTSLTAAIFDVAGKDPTVIIGGRLNAY-GANARLGEGEYLIAEADESDGSFLCLFPIVNVVTNVDMDHVDFYAGQKEIDEAFVTFMNKVPFYGANVVCGDDPGVRRLLPQVKR 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DESVH (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=murC PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.747e-14
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S+ A +    G D T I+G  +  +   +   G G+  + EADE DG FL L P V VVTN+D +HVD +  +  +   F  F+ ++   G  V+CGD    R LL Q+K+
Sbjct:  116 KTTTTSLTAAIFDVAGKDPTVIIGGRLNAY-GANARLGEGEYLIAEADESDGSFLCLFPIVNVVTNVDMDHVDFYAGQKEIDEAFVTFMNKVPFYGANVVCGDDPGVRRLLPQVKR 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_SALRD (UDP-N-acetylmuramate--L-alanine ligase OS=Salinibacter ruber (strain DSM 13855) GN=murC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 41/116 (35.34%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT SM   V+   G D T IVG  V  F   +I  G G   V+EADEYD  FL L+PS+AV+T+++ +H+D++ED  A+++ F ++   +   G  ++C D    ++++  +++
Sbjct:  125 KTTTTSMAGLVVAEGGFDPTVIVGGKVTAFGSNAIT-GEGDVLVIEADEYDRTFLRLTPSLAVITSIEEDHLDVYEDLAAIQASFTQYANSVPFFGAAILCLDDPNVQAIVGDVER 239          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RUBXD (UDP-N-acetylmuramate--L-alanine ligase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=murC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLD 639
            K+TT SM+A+ L+A+G++ TA+VG  +       IF G     V EADE D   L L P  AV+TN++++H D +   + V   F RF+  +   GHLV+C D    R L +
Sbjct:  111 KTTTTSMIAHSLRALGENPTALVGGELNDIGSNVIF-GREDLIVAEADESDRSILRLHPQAAVITNIEYDHPDFYASLEEVVETFARFVAGLPPEGHLVLCADDPRCRRLAE 221          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_ROSS1 (UDP-N-acetylmuramate--L-alanine ligase OS=Roseiflexus sp. (strain RS-1) GN=murC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT +++A +L   G +   ++G   P     + +       V+EADEYD  FL L+P VAV+TN++W+HVDI+   D  ++ FR F +++     L++CGD
Sbjct:  111 KTTTTALIALMLTQAGGNPGFLIGGETPDLGIHARWGDPAAPLVVEADEYDRTFLALTPDVAVMTNVEWDHVDIYPSPDNYEAAFRLFTRRVAQPQRLIVCGD 213          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_SINMW (UDP-N-acetylmuramate--L-alanine ligase OS=Sinorhizobium medicae (strain WSM419) GN=murC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L A G D T I G  +  +   +   G G+  V+EADE DG FL L   +AVVTN+D EH+D +   DAV+S FR+F++ +   G  V+C D    +S++ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGGLDPTVINGGIINAYGTNARM-GAGEWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGSFDAVRSAFRQFVENVPFYGFGVLCLDHPEVQSMVGKIEDRKVVTY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MOOTA (UDP-N-acetylmuramate--L-alanine ligase OS=Moorella thermoacetica (strain ATCC 39073) GN=murC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 37/103 (35.92%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT++++A V+K  G +  A++G +V +F   + + G G   V EADE DG FL L P +A++TN++ +H++ +   D + + F+ F+ QIR GG  ++C +
Sbjct:  119 KTTTSALVALVMKEGGLEPAAVIGGYVREFASNA-YPGRGDFLVAEADESDGSFLWLKPEIALITNIEADHLEHYGSLDRIVAAFKDFIDQIRPGGKAILCAE 220          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_ANADE1.338e-1437.93UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromy... [more]
MURC_ANAD21.338e-1437.93UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromy... [more]
MURC_MYCVP1.747e-1438.60UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_DESVV1.747e-1437.07UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]
MURC_DESVH1.747e-1437.07UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]
MURC_SALRD2.282e-1435.34UDP-N-acetylmuramate--L-alanine ligase OS=Saliniba... [more]
MURC_RUBXD2.282e-1438.39UDP-N-acetylmuramate--L-alanine ligase OS=Rubrobac... [more]
MURC_ROSS12.282e-1435.92UDP-N-acetylmuramate--L-alanine ligase OS=Roseifle... [more]
MURC_SINMW2.980e-1439.34UDP-N-acetylmuramate--L-alanine ligase OS=Sinorhiz... [more]
MURC_MOOTA2.980e-1435.92UDP-N-acetylmuramate--L-alanine ligase OS=Moorella... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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