DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PSEAB (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 657
            K+TT S++A V  A G D T ++G  +      +   G  +  V EADE D  FL L P VAVVTN+D +H+  +  D + +K  F  FL  +   G  V+C D    R +L QI + T
Sbjct:  126 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GASRYLVAEADESDASFLHLQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPT 243          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PSEA8 (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas aeruginosa (strain LESB58) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 657
            K+TT S++A V  A G D T ++G  +      +   G  +  V EADE D  FL L P VAVVTN+D +H+  +  D + +K  F  FL  +   G  V+C D    R +L QI + T
Sbjct:  126 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GASRYLVAEADESDASFLHLQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPT 243          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PSEA7 (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas aeruginosa (strain PA7) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 657
            K+TT S++A V  A G D T ++G  +      +   G  +  V EADE D  FL L P VAVVTN+D +H+  +  D + +K  F  FL  +   G  V+C D    R +L QI + T
Sbjct:  126 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GASRYLVAEADESDASFLHLQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPT 243          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PSE14 (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 657
            K+TT S++A V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+  +E D + +K  F  FL  +   G  V+C D    R +L  +K+ T
Sbjct:  127 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GTSRYLIAEADESDASFLHLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILPLVKRPT 244          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_HERAR (UDP-N-acetylmuramate--L-alanine ligase OS=Herminiimonas arsenicoxydans GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 40/117 (34.19%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S++A VL   G D T ++G  +      +   G G+  V EADE D  FL LSP + V+TN+D +H++ +E D + +K  F  F +++   G  V+C D    R ++ +I +
Sbjct:  116 KTTTTSLVASVLAEGGLDPTFVIGGLLNS-AGANAKLGAGEFIVAEADESDASFLNLSPVIEVITNIDADHMETYEHDFEKLKQAFVEFTQRLPFYGVAVLCLDDATVREIMPRISK 231          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_ACIC1 (UDP-N-acetylmuramate--L-alanine ligase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 633
            K+TT SM+   L+  G D +  +GA + + P  +   G G  FV EADE D  FL L    AVVTN++ +H++ + D  A+ + F RF+ ++  GG LV C D   A  +
Sbjct:  129 KTTTTSMVVRALQRCGADPSFAIGADLGE-PGSNAHDGTGSIFVAEADESDESFLLLPFHAAVVTNVEADHLNHYADLAAIHAAFDRFVAKVPDGGFLVACTDDPGAEEI 237          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_ACIBL (UDP-N-acetylmuramate--L-alanine ligase OS=Acidobacteria bacterium (strain Ellin345) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 43/116 (37.07%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT SM+A VL     D T IVG  V      +   G     V EADE D  FL L    AVVTN+D EH+D + D + V+  F  F+ ++   G +V C D++  R++L ++++
Sbjct:  116 KTTTTSMVAAVLAGGELDPTVIVGGRVDAMGSNARL-GKSHYLVAEADESDRSFLKLWFIHAVVTNIDREHMDTYHDMEDVERTFVEFMDRVPFYGMVVACNDNEPLRAILPRVRR 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_VARPS (UDP-N-acetylmuramate--L-alanine ligase OS=Variovorax paradoxus (strain S110) GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 40/115 (34.78%), Postives = 63/115 (54.78%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT S++A VL A G D T ++G  +      +   G G   V+EADE D  FL L P +AVVTN+D +H++ +  D   +K  F  FL ++   G  ++C D    R ++ ++
Sbjct:  116 KTTTTSLVASVLDAAGLDPTFVIGGRLNS-AGANAQLGSGDYIVVEADESDASFLNLLPVMAVVTNIDADHMETYGHDFAKLKKAFVDFLHRMPFYGVAILCTDDPAVRDIVAEV 229          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_THIDA (UDP-N-acetylmuramate--L-alanine ligase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT S++A +L   G D T ++G  +      +   G G   V EADE D  FL L+P +A+VTN+D +H+D +  D D +K+ F  F +++   G  V+C D    R +L +I
Sbjct:  116 KTTTTSLVASILGEAGMDPTYVIGGKLTAAGTNARL-GQGDFLVAEADESDASFLYLTPVIAIVTNIDADHMDTYGHDFDRLKTAFVDFCQRLPFYGMAVLCIDDANVREILPRI 229          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RICCN (UDP-N-acetylmuramate--L-alanine ligase OS=Rickettsia conorii GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 37/126 (29.37%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  274 CTRQARSQTRKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            C+        K+TT S++A + +A G   T I G  +      + + G     + EADE D  F+ +  ++A++TN+D EH+D + D + +   FR F+  +   G  V C D +  R L+D I +
Sbjct:  114 CSVAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINN-KSTNAYLGSSNYLIAEADESDATFIHIPSTIAIITNIDPEHLDYYRDFETLIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDDITE 238          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_PSEAB6.869e-1136.97UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_PSEA86.869e-1136.97UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_PSEA76.869e-1136.97UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_PSE146.869e-1136.13UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_HERAR6.869e-1134.19UDP-N-acetylmuramate--L-alanine ligase OS=Herminii... [more]
MURC_ACIC16.869e-1137.27UDP-N-acetylmuramate--L-alanine ligase OS=Acidothe... [more]
MURC_ACIBL6.869e-1137.07UDP-N-acetylmuramate--L-alanine ligase OS=Acidobac... [more]
MURC_VARPS8.972e-1134.78UDP-N-acetylmuramate--L-alanine ligase OS=Variovor... [more]
MURC_THIDA8.972e-1135.65UDP-N-acetylmuramate--L-alanine ligase OS=Thiobaci... [more]
MURC_RICCN8.972e-1129.37UDP-N-acetylmuramate--L-alanine ligase OS=Ricketts... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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