DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RICAE (UDP-N-acetylmuramate--L-alanine ligase OS=Rickettsia africae (strain ESF-5) GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 37/126 (29.37%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  274 CTRQARSQTRKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            C+        K+TT S++A + +A G   T I G  +      + + G     + EADE D  F+ +  ++A++TN+D EH+D + D + +   FR F+  +   G  V C D +  R L+D I +
Sbjct:  114 CSVAVSGSHGKTTTTSLVACLFEAAGLCPTVINGGIINN-KSTNAYLGSSNYLIAEADESDATFIHIPSTIAIITNIDPEHLDYYRDFETLIGAFRSFITNLPFYGFAVCCIDHKIVRKLVDDITE 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_NITOC (UDP-N-acetylmuramate--L-alanine ligase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 44/115 (38.26%), Postives = 61/115 (53.04%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT S++A +L     D T ++G  V      S   G G+  V EADE D  FL L P +AV+TN+D +H+D +  D  A+K+ F  FL  +   G  V+C D    R LL  I
Sbjct:  127 KTTTTSLIAGILGEANLDPTFVIGGQVNSIGANSRL-GKGEYLVAEADESDASFLLLQPLLAVITNVDADHMDAYGGDFTALKAAFLEFLHHLPFYGLAVVCLDDPVLRELLPGI 240          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DIAST (UDP-N-acetylmuramate--L-alanine ligase OS=Diaphorobacter sp. (strain TPSY) GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 636
            K+TT S++A VL   G D T ++G  +      +   G G+  V+EADE DG FL L P +AVVTN+D +H++ +  D   +K  F  FL ++   G  ++C D+   R +L
Sbjct:  116 KTTTTSLVASVLGEAGLDPTFVIGGRLNSAGTNAKL-GQGEYIVVEADESDGSFLNLLPVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAILCIDNPAVRDIL 226          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CLOPH (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 35/114 (30.70%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K+TT SM++ ++     D T  VG  +    +G+I  G  +NF++E+ EY   FL  +P+ A++ N++ EH+D F+D + +++ F  F K++   G+LV+ G       L++ +
Sbjct:  122 KTTTTSMVSLMMLEGNFDPTISVGGILDNI-EGNIRIGHSENFIVESCEYKNSFLSFNPAHAIILNIEAEHLDFFKDIEDIRTSFHTFAKKLPDYGNLVVWGGIDRYEELIEDL 234          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BORPD (UDP-N-acetylmuramate--L-alanine ligase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 636
            K+TT S++A VL A   D T ++G  +      +   G G+  V+EADE D  FL L P +A+VTN+D +H+D +  D   +KS F  F +++   G  V+C D    R ++
Sbjct:  116 KTTTTSLVASVLAAGDLDPTFVIGGRLTS-AGANARLGQGEYIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAVLCADDANVREIM 226          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BLOFL (UDP-N-acetylmuramate--L-alanine ligase OS=Blochmannia floridanus GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 39/117 (33.33%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT SML  +    G D T + G  + +    S   G G +F+ E+DE D  FL L P VAV+TN+D +H++ + ++ + ++ +F +FL ++ + G+ V+C D    R +L +I +
Sbjct:  131 KTTTVSMLTNIYVEAGLDPTFVNGGII-RSQGVSARLGYGNDFIAESDESDKSFLRLCPVVAVITNIDTDHMNTYHQNFEYLQEVFIKFLDKLPMYGYAVVCIDDPVVRKILPRINR 246          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_ACISJ (UDP-N-acetylmuramate--L-alanine ligase OS=Acidovorax sp. (strain JS42) GN=murC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 636
            K+TT S++A VL   G D T ++G  +      +   G G+  V+EADE DG FL L P +AVVTN+D +H++ +  D   +K  F  FL ++   G  ++C D+   R +L
Sbjct:  116 KTTTTSLVASVLGEAGLDPTFVIGGRLNSAGTNAKL-GQGEYIVVEADESDGSFLNLLPVMAVVTNIDADHMETYGHDFGRLKQAFVDFLHRMPFYGTAILCIDNPAVRDIL 226          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_RICAE8.972e-1129.37UDP-N-acetylmuramate--L-alanine ligase OS=Ricketts... [more]
MURC_NITOC8.972e-1138.26UDP-N-acetylmuramate--L-alanine ligase OS=Nitrosoc... [more]
MURC_DIAST8.972e-1136.61UDP-N-acetylmuramate--L-alanine ligase OS=Diaphoro... [more]
MURC_CLOPH8.972e-1130.70UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_BORPD8.972e-1135.71UDP-N-acetylmuramate--L-alanine ligase OS=Bordetel... [more]
MURC_BLOFL8.972e-1133.33UDP-N-acetylmuramate--L-alanine ligase OS=Blochman... [more]
MURC_ACISJ8.972e-1136.61UDP-N-acetylmuramate--L-alanine ligase OS=Acidovor... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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