DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6217 contig Csv1_Contig6217:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRASB (UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=murC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.980e-14
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L A G D T I G  +  +   +   G G   V+EADE DG FL L   VA+VTN+D EH+D F+  DAV+  FR F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGGIDPTVINGGIINAYGTNARL-GAGDWMVVEADESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDAFRAFVENVPFYGFAVMCIDHPVVQALVGKIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RHOPT (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopseudomonas palustris (strain TIE-1) GN=murC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L A   D T I G  +  +   +   GGG   V+EADE DG FL L   VA+VTN+D EH+D F+  DAV+  FR F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGDLDPTVINGGIINAYGTNARL-GGGDWMVVEADESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTLVGKIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RHOPA (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopseudomonas palustris GN=murC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L A   D T I G  +  +   +   GGG   V+EADE DG FL L   VA+VTN+D EH+D F+  DAV+  FR F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGDLDPTVINGGIINAYGTNARL-GGGDWMVVEADESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQTLVGKIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RHISN (UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobium sp. (strain NGR234) GN=murC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L A G D T I G  +  +   +   G G+  V+EADE DG FL L   +AVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    +S++ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGGLDPTVINGGIINAYGTNARM-GAGEWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVLCLDHPEVQSMVGKIEDRKVITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCLE (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium leprae GN=murC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 633
            K+TT SML   L+  G D + +VG  +      +  +G G  FV EADE DG  L  +P+VAVVTN+D +H+D +   DA   +F  F+++  +GG LV+C D   A +L
Sbjct:  126 KTTTTSMLVVALQHCGCDPSFVVGGELAVVGTNA-HHGLGACFVAEADESDGSLLEYTPNVAVVTNIDSDHLDFYGSVDAYIRVFDSFVERFALGGALVVCNDDPGAAAL 234          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCLB (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium leprae (strain Br4923) GN=murC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 44/110 (40.00%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 633
            K+TT SML   L+  G D + +VG  +      +  +G G  FV EADE DG  L  +P+VAVVTN+D +H+D +   DA   +F  F+++  +GG LV+C D   A +L
Sbjct:  126 KTTTTSMLVVALQHCGCDPSFVVGGELAVVGTNA-HHGLGACFVAEADESDGSLLEYTPNVAVVTNIDSDHLDFYGSVDAYIRVFDSFVERFALGGALVVCNDDPGAAAL 234          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_GEOSF (UDP-N-acetylmuramate--L-alanine ligase OS=Geobacter sp. (strain FRC-32) GN=murC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT SM+A +L   G D T ++G  +      +   G GK  V EADE DG FL LSP++AVVTN+D +H+D +   + +K  F  F+ +I   G  V+C D+     ++  +K+
Sbjct:  116 KTTTTSMVATILATGGIDPTIVIGGRLNSIGTNARL-GQGKFLVAEADESDGSFLKLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLDNGNVADIIPLVKK 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CHLP8 (UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobaculum parvum (strain NCIB 8327) GN=murC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT +M+A +L   G   T ++G  V  +  GS   G G++ V+EADEYD  FL L+P++AVV +L+ EH+D +   D ++  F  F  ++   G ++ C D    RSL+ ++ +
Sbjct:  118 KTTTTAMIATMLLESGQSPTVMIGG-VSDYLKGSTVVGEGRHMVIEADEYDRAFLKLTPTIAVVNSLESEHMDTYGTMDNLRDSFAAFANKVPFYGRVICCVDWPEIRSLISRLNR 232          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_METRJ (UDP-N-acetylmuramate--L-alanine ligase OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=murC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 48/122 (39.34%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G+  V+EADE DG FL L   VA+VTN+D EH+D F   DA+K  FRRF+  I   G  V+C D    + L+  I+    + Y
Sbjct:  118 KTTTTSLVATLLDAGNLDPTVINGGIINAYGTNARM-GAGEWMVVEADESDGTFLKLPADVAIVTNIDPEHLDHFGSFDAIKDAFRRFIDNIPFYGFAVMCIDHPVVQDLVGHIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CORU7 (UDP-N-acetylmuramate--L-alanine ligase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=murC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.083e-14
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK----QDTGLKYSGGVVSNQSSDL 705
            K++T SM    ++A G D +  +G  + +    +  +G G+ F+ EADE DG FL  SP VAV+TN++ +H+D +  E+A  +IF  F  ++  GG+LV C D   A +L  +++      T L Y     ++Q  D+
Sbjct:  126 KTSTTSMAVVGVQAAGLDPSFAIGGQLNRAGTNA-HHGTGEIFIAEADESDGSFLSYSPEVAVITNIEPDHLDYYGTEEAYVAIFDEFATKVTPGGYLVCCLDDPGAAALAARVRAAGTAPTVLGYGSRAAADQHPDI 262          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_BRASB2.980e-1439.34UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhi... [more]
MURC_RHOPT3.892e-1439.34UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopse... [more]
MURC_RHOPA3.892e-1439.34UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopse... [more]
MURC_RHISN3.892e-1438.52UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobiu... [more]
MURC_MYCLE3.892e-1440.00UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCLB3.892e-1440.00UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_GEOSF3.892e-1437.07UDP-N-acetylmuramate--L-alanine ligase OS=Geobacte... [more]
MURC_CHLP83.892e-1435.34UDP-N-acetylmuramate--L-alanine ligase OS=Chloroba... [more]
MURC_METRJ5.083e-1439.34UDP-N-acetylmuramate--L-alanine ligase OS=Methylob... [more]
MURC_CORU75.083e-1433.33UDP-N-acetylmuramate--L-alanine ligase OS=Coryneba... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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