DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RHIEC (UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=murC PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L+A G D T I G  +  +   +   G G+  V+EADE DG FL L   VAV+TN+D EH+D + + DAV++ FR+F++ +   G  V+C D    +SL+ +I+    + Y
Sbjct:  118 KTTTTSLVATLLEAGGLDPTVINGGIINAYGTNARM-GEGEWMVVEADESDGTFLKLPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIEDRKIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_METS4 (UDP-N-acetylmuramate--L-alanine ligase OS=Methylobacterium sp. (strain 4-46) GN=murC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 47/122 (38.52%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A G D T I G  +  +   +   G G+  V+EADE DG FL L   +A+VTN+D EH+D F   DA+K  FR F+  I   G  V+C D    + L+ +I+    + Y
Sbjct:  118 KTTTTSLVATLLDAGGLDPTVINGGIINAYGTNARM-GEGEWMVVEADESDGTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDAFRAFIDNIPFYGFAVMCIDHPTVQDLVGRIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_METPB (UDP-N-acetylmuramate--L-alanine ligase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=murC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   VA+VTN+D EH+D F   DA+K  FRRF+  I   G  V+C D    + L+  I+    + Y
Sbjct:  118 KTTTTSLVATLLDAGNLDPTVINGGIINAYGTNARM-GAGDWMVVEADESDGTFLKLPADVAIVTNIDPEHLDHFGSFDAIKDAFRRFIDNIPFYGFAVMCIDHPIVQDLVGHIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MAGSM (UDP-N-acetylmuramate--L-alanine ligase OS=Magnetococcus sp. (strain MC-1) GN=murC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD----SQCARSLLDQ 642
            K+TT S++A +L A   D T + G  V      +   G G   V EADE DG FL LSP++AVVTN+D EH++ +   DAV+  FR F+ +I   G  V+CGD    S  A  +LD+
Sbjct:  116 KTTTTSLVAALLGAADMDPTVVNGGIVKSLGSNA-HVGQGAFLVTEADESDGSFLKLSPTIAVVTNMDPEHMNHYGTFDAVREAFRGFVSKIPFYGLAVLCGDHPEVSLLAEEMLDK 231          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_GEOBB (UDP-N-acetylmuramate--L-alanine ligase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=murC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT SM+A +L   G D T ++G  +      +   G G+  V EADE DG FL LSP++AVVTN+D +H+D +   + +K  F  F+ +I   G  V+C D+     +L ++K+
Sbjct:  116 KTTTTSMVATILSKGGIDPTIVIGGRLNSLGTNARL-GQGQFLVAEADESDGSFLLLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLDNGNIADVLPRVKK 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DESDA (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=murC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT S+ A +    G D T I+G  +  +   +   G G+  + EADE DG FL L P + VVTN+D +H+D ++  +A+ S F +F+  +   G  ++CGD      LL Q+K+
Sbjct:  116 KTTTTSLTASIFDEAGLDPTVIIGGRLNVY-GANAHLGHGEYLIAEADESDGSFLCLLPIINVVTNVDEDHLDHYKTREAINSAFVQFMNNVPFYGLNIVCGDDPGVLELLPQVKR 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DESAH (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=murC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 40/114 (35.09%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K++T +M+A +L   G D T +VG  +      +  +G G   V EADE DG FL  +P++A VTN+D EH+D ++D + +K  F +F+  +   G  V+C D++  +++L +I
Sbjct:  116 KTSTTAMIATILNQAGLDPTVVVGGLLKSIGTNA-HHGKGDYIVAEADESDGSFLKYAPAIAAVTNIDLEHLDFYKDIEDIKDNFVKFINSVPFYGLAVLCLDNEHIQAILPRI 228          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BRAJA (UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhizobium japonicum GN=murC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT +M+A +L A G D T I G  +  +   +   G G   V+EADE DG FL L   VA+VTN+D EH+D F+  +AV+  FR F++ +   G  V+C D    +SL+ +I+    + Y
Sbjct:  118 KTTTTTMVATLLDAGGLDPTVINGGIINAYGSNARL-GAGDWMVVEADESDGTFLKLPTDVAIVTNVDPEHLDHFKTFEAVQDAFRHFVENLPFYGFAVMCIDHPVVQSLVGKIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PELTS (UDP-N-acetylmuramate--L-alanine ligase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=murC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 636
            K+TT SM A VL+  G D T ++G  + +   G+   G G+  V EADE DG FL L P + ++TN++ +H+D +   + + + FRRF+ ++   G  V C D    R LL
Sbjct:  115 KTTTTSMTALVLEKNGMDPTIVIGGELSEI-GGNAKLGRGEYLVAEADESDGSFLKLDPVIEIITNIEDDHLDYYRSVENILAAFRRFMAKVPESGLAVACLDDPRLRELL 224          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_NITHX (UDP-N-acetylmuramate--L-alanine ligase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=murC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.132e-13
Identity = 46/115 (40.00%), Postives = 68/115 (59.13%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 648
            K+TT SM+A +L A   D T I G  +  +   +   G G+  V+EADE DG FL L   VA+VTN+D EH+D F+  DAV+  FR F++ +   G  V+C D    +S++ +I+
Sbjct:  118 KTTTTSMVAALLDAGDFDPTVINGGIINAYGTNARL-GAGEWMVVEADESDGTFLKLPTDVAIVTNVDPEHLDHFKTFDAVQDAFRSFVENVPFYGFAVMCIDHPVVQSMVGRIE 231          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_RHIEC8.670e-1438.52UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobiu... [more]
MURC_METS48.670e-1438.52UDP-N-acetylmuramate--L-alanine ligase OS=Methylob... [more]
MURC_METPB8.670e-1439.34UDP-N-acetylmuramate--L-alanine ligase OS=Methylob... [more]
MURC_MAGSM8.670e-1441.88UDP-N-acetylmuramate--L-alanine ligase OS=Magnetoc... [more]
MURC_GEOBB8.670e-1437.07UDP-N-acetylmuramate--L-alanine ligase OS=Geobacte... [more]
MURC_DESDA8.670e-1435.34UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]
MURC_DESAH8.670e-1435.09UDP-N-acetylmuramate--L-alanine ligase OS=Desulfob... [more]
MURC_BRAJA8.670e-1438.52UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhi... [more]
MURC_PELTS1.132e-1336.94UDP-N-acetylmuramate--L-alanine ligase OS=Pelotoma... [more]
MURC_NITHX1.132e-1340.00UDP-N-acetylmuramate--L-alanine ligase OS=Nitrobac... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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