DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RHOPS (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopseudomonas palustris (strain BisB5) GN=murC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   VAVVTN+D EH+D F+  DAV+  FR F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGDVDPTVINGGIINAYGTNARL-GAGDWMVVEADESDGTFLKLPADVAVVTNVDPEHLDHFKTFDAVQDAFRIFVENVPFYGFAVMCIDHPVVQALVGKIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_METEP (UDP-N-acetylmuramate--L-alanine ligase OS=Methylobacterium extorquens (strain PA1) GN=murC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   VA+VTN+D EH+D F   +A+K  FRRF+  I   G  V+C D    + L+  I+    + Y
Sbjct:  118 KTTTTSLVATLLDAGNLDPTVINGGIINAYGTNARM-GAGDWMVVEADESDGTFLKLPADVAIVTNIDPEHLDHFGSFEAIKDAFRRFIDNIPFYGFAVMCIDHPIVQDLVGHIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_METC4 (UDP-N-acetylmuramate--L-alanine ligase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=murC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   VA+VTN+D EH+D F   +A+K  FRRF+  I   G  V+C D    + L+  I+    + Y
Sbjct:  118 KTTTTSLVATLLDAGNLDPTVINGGIINAYGTNARM-GAGDWMVVEADESDGTFLKLPADVAIVTNIDPEHLDHFGSFEAIKDAFRRFIDNIPFYGFAVMCIDHPIVQDLVGHIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CHLTE (UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobium tepidum GN=murC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 39/116 (33.62%), Postives = 67/116 (57.76%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT +M+A +L   G   T ++G  V  +  GS   G GK+ V+EADEYD  FL L+P++AV+ +L+ EH+D +   D ++  F  F  ++   G ++ C D    R ++ ++ +
Sbjct:  121 KTTTTAMVATMLLEAGQSPTVMIGG-VSDYLKGSTVVGEGKSMVIEADEYDRAFLKLTPTIAVLNSLESEHMDTYGTMDNLRDCFAEFANKVPFYGRVICCVDWPEIRRIIPRLNR 235          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CHLAA (UDP-N-acetylmuramate--L-alanine ligase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=murC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.523e-13
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT ++ A  L+  G     ++GA VP     + +       V+EADEYD  FL L+P++A++TN++W+H D++       + F  F +Q+R    L++C D   A +L  Q
Sbjct:  112 KTTTTALTALALRGAGIRCGFLIGADVPALGGSAQWGDPEAPLVIEADEYDRVFLALTPALAIITNVEWDHPDVYPTPSEYTAAFAAFSRQVRDPRRLLVCADDPGALALAGQ 224          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_NOCFA (UDP-N-acetylmuramate--L-alanine ligase OS=Nocardia farcinica GN=murC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 42/114 (36.84%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 645
            K++T SML   L+  G D +  VG  + +    +  +G G+ FV EADE DG  L   P VAVVTN++ +H+D F  + A   +F  F  ++  GG LV+C D   +R+L +++
Sbjct:  134 KTSTTSMLIVALQHCGFDPSFAVGGELNEAGTNA-HHGTGEIFVAEADESDGSLLQYDPDVAVVTNIESDHLDFFGSDAAYTQVFDDFADRLAAGGLLVVCLDDPGSRALAERV 246          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CAUCR (UDP-N-acetylmuramate--L-alanine ligase OS=Caulobacter crescentus GN=murC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 648
            K+TT SM+A +L A G D T + G  +  +   +   G G   V+EADE DG FL L  +VA+VTN+D EH+D + D DAVK  F+ F++ I   G   +C D    ++L  +I+
Sbjct:  123 KTTTTSMVAALLDAGGLDPTVVNGGIINAYGTNAKV-GEGDWIVVEADESDGSFLKLKSTVAIVTNIDAEHLDHWGDFDAVKKGFQDFIQNIPFYGFAAVCTDHPEVQALTSRIE 236          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_CAUCN (UDP-N-acetylmuramate--L-alanine ligase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=murC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 648
            K+TT SM+A +L A G D T + G  +  +   +   G G   V+EADE DG FL L  +VA+VTN+D EH+D + D DAVK  F+ F++ I   G   +C D    ++L  +I+
Sbjct:  123 KTTTTSMVAALLDAGGLDPTVVNGGIINAYGTNAKV-GEGDWIVVEADESDGSFLKLKSTVAIVTNIDAEHLDHWGDFDAVKKGFQDFIQNIPFYGFAAVCTDHPEVQALTSRIE 236          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_BEII9 (UDP-N-acetylmuramate--L-alanine ligase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=murC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT S++A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   +A+VTN+D EH+D F+  DA+K  FR F++ I   G  V+C D    + L+  I+    + Y
Sbjct:  118 KTTTTSLVATLLDAGKFDPTVINGGIINAYGTNARL-GAGDWMVVEADESDGTFLKLPADIAIVTNIDPEHLDHFKTFDAIKQAFRAFIENIPFYGFAVMCLDHPVVQELVGTIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_AGRT5 (UDP-N-acetylmuramate--L-alanine ligase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=murC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L+A   D T I G  +  +   +   G G+  V+EADE DG FL L   VAV+TN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVATLLEAGNLDPTVINGGIINAYGTNARM-GEGEWMVVEADESDGTFLKLPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIEDRKVITY 238          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_RHOPS2.523e-1339.34UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopse... [more]
MURC_METEP2.523e-1338.52UDP-N-acetylmuramate--L-alanine ligase OS=Methylob... [more]
MURC_METC42.523e-1338.52UDP-N-acetylmuramate--L-alanine ligase OS=Methylob... [more]
MURC_CHLTE2.523e-1333.62UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobi... [more]
MURC_CHLAA2.523e-1332.74UDP-N-acetylmuramate--L-alanine ligase OS=Chlorofl... [more]
MURC_NOCFA3.295e-1336.84UDP-N-acetylmuramate--L-alanine ligase OS=Nocardia... [more]
MURC_CAUCR3.295e-1340.00UDP-N-acetylmuramate--L-alanine ligase OS=Caulobac... [more]
MURC_CAUCN3.295e-1340.00UDP-N-acetylmuramate--L-alanine ligase OS=Caulobac... [more]
MURC_BEII93.295e-1337.70UDP-N-acetylmuramate--L-alanine ligase OS=Beijerin... [more]
MURC_AGRT53.295e-1337.70UDP-N-acetylmuramate--L-alanine ligase OS=Agrobact... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
back to top