DR404627

Overview
NameDR404627
Unique NameDR404627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RHOP5 (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopseudomonas palustris (strain BisA53) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 46/122 (37.70%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 669
            K+TT SM+A +L A   D T I G  +  +   +   G G+  V+EADE DG FL L   VA+VTN+D EH+D F+  +AV++ FR F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGEFDPTVINGGIINAYGTNARL-GAGEWMVVEADESDGTFLKLPADVAIVTNVDPEHLDHFKTFEAVQNAFRDFVENVPFYGFAVMCIDHPVVQALVGKIEDRRIITY 238          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_RENSM (UDP-N-acetylmuramate--L-alanine ligase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT +M+A +L+  G D +  VG  VP     +  +G G  FV EADE DG FL   P +AVVTN + +H+D +   +AV   F+ F+  I   G LV C D   A +L  Q
Sbjct:  119 KTTTTAMIAVLLREAGLDPSFAVGGTVPALGVNAA-HGAGGIFVAEADESDGSFLNYRPQIAVVTNAEPDHLDHYGTAEAVMEAFQSFIGLIPADGLLVACTDDDGALALAKQ 230          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCSS (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium sp. (strain MCS) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML   L+  G D +  VG  + +    +  +G G+ FV EADE DG  L  +P VAVVTN++ +H+D F   +A  ++F  F++++  GG L+ C D   + +L ++
Sbjct:  126 KTTTTSMLIVALQHCGFDPSFAVGGDLGEAGTNA-HHGSGECFVAEADESDGSLLEYTPDVAVVTNIEADHLDFFGSAEAYTAVFDAFVERLTPGGALIACVDDPGSAALAER 237          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCSK (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium sp. (strain KMS) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML   L+  G D +  VG  + +    +  +G G+ FV EADE DG  L  +P VAVVTN++ +H+D F   +A  ++F  F++++  GG L+ C D   + +L ++
Sbjct:  126 KTTTTSMLIVALQHCGFDPSFAVGGDLGEAGTNA-HHGSGECFVAEADESDGSLLEYTPDVAVVTNIEADHLDFFGSAEAYTAVFDAFVERLTPGGALIACVDDPGSAALAER 237          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCSJ (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium sp. (strain JLS) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SML   L+  G D +  VG  + +    +  +G G+ FV EADE DG  L  +P VAVVTN++ +H+D F   +A  ++F  F++++  GG L+ C D   + +L ++
Sbjct:  126 KTTTTSMLIVALQHCGFDPSFAVGGDLGEAGTNA-HHGSGECFVAEADESDGSLLEYTPDVAVVTNIEADHLDFFGSAEAYTAVFDAFVERLTPGGALIACVDDPGSAALAER 237          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_MYCMM (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 642
            K+TT SM+   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAVVTN++ +H+D +   +A   +F  F++++  GG LV+C D   + +L ++
Sbjct:  126 KTTTTSMVIVALQHCGRDPSFAVGGELGEAGTNA-HHGSGDYFVAEADESDGSLLEYTPHVAVVTNIEADHLDFYGSTEAYVGVFDAFVERLAPGGALVVCADDPGSAALAER 237          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_DICT6 (UDP-N-acetylmuramate--L-alanine ligase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=murC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 41/115 (35.65%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 648
            K+TT SM+A VL+    D T IVG  +     G+   G G+  V E DE DG  L L+P + VVTN+D +H+D +E+ + +KS F + ++++   G++++  D +  R ++ +IK
Sbjct:  115 KTTTTSMIALVLENNKTDPTIIVGGELEDI-GGNAKLGSGEYLVAEGDESDGSILKLNPYILVVTNIDNDHLDYYENIENIKSTFLKVIEKVPEDGYVLLNLDCKNIRDIIGKIK 228          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_SYMTH (UDP-N-acetylmuramate--L-alanine ligase OS=Symbiobacterium thermophilum GN=murC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 45/121 (37.19%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDA-VKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGL 663
            K+TT+SM+A +L+  G D T ++G  + +   G+   G G   V EADE D  FL   P VAVVTN++ EH++ +E   A ++  FR+FL+Q++ GG   +C D    RS+  +++   G+
Sbjct:  115 KTTTSSMVACLLEKAGLDPTILLGGDL-EVIGGTGKAGRGDWVVAEADESDRSFLRYHPRVAVVTNVEPEHLEFWEGSFARIQEGFRQFLRQVQPGGLAALCADDPTLRSIGQELRNQPGV 234          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PROVI (UDP-N-acetylmuramate--L-alanine ligase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=murC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 38/116 (32.76%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 651
            K+TT +M+A +L   G+  T ++G  +  +  GS   G GK  V+EADEYD  FL L+P++AV+ +L+ EH+D +   + +K  F  F  ++   G ++ C D    R ++  + +
Sbjct:  118 KTTTTAMVATMLIEAGESPTVMIGG-ISDYLKGSTVVGSGKYMVIEADEYDRAFLKLTPTIAVLNSLEAEHMDTYGTLEDLKKAFVAFANKVPFYGRVICCADWPEIRGIIGSLNR 232          
BLAST of DR404627 vs. ExPASy Swiss-Prot
Match: MURC_PROA2 (UDP-N-acetylmuramate--L-alanine ligase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=murC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.620e-13
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  304 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 612
            K+TT +M+A +L   G+  T ++G  +  +  GS   G GK  V+EADEYD  FL L+PS+AV+ +L+ EH D +   D ++  F  F   +   G ++ C D
Sbjct:  118 KTTTTAMIATMLIEAGESPTVMIGG-ISDYLKGSTVVGNGKYMVIEADEYDRAFLKLTPSIAVINSLEAEHADTYATLDELRDAFIDFANSVPFYGKVICCVD 219          
The following BLAST results are available for this feature:
BLAST of DR404627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_RHOP54.303e-1337.70UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopse... [more]
MURC_RENSM4.303e-1339.82UDP-N-acetylmuramate--L-alanine ligase OS=Renibact... [more]
MURC_MYCSS4.303e-1336.28UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCSK4.303e-1336.28UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCSJ4.303e-1336.28UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCMM4.303e-1335.40UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_DICT64.303e-1335.65UDP-N-acetylmuramate--L-alanine ligase OS=Dictyogl... [more]
MURC_SYMTH5.620e-1337.19UDP-N-acetylmuramate--L-alanine ligase OS=Symbioba... [more]
MURC_PROVI5.620e-1332.76UDP-N-acetylmuramate--L-alanine ligase OS=Prosthec... [more]
MURC_PROA25.620e-1336.89UDP-N-acetylmuramate--L-alanine ligase OS=Prosthec... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243P01 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243P01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404627 ID=DR404627; Name=DR404627; organism=Citrus sinensis; type=EST; length=726bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATCTTTTTACGGAAACATTCCT
CTCTCGTTCAAATCTANTCGNNNCACACCTTCTATATTATTATTTATGAA
GAAGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATG
AAGAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTG
GGAATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACA
AGGAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGG
GGATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACG
GAAGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAA
TATGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAA
TCTGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAA
GTATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTC
ATATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACA
AGATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAG
ATCTATGGGGACAAGGGCATGATTTA
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