DR404625

Overview
NameDR404625
Unique NameDR404625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6217 contig Csv1_Contig6217:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_ANATD (UDP-N-acetylmuramate--L-alanine ligase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=murC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 41/114 (35.96%), Postives = 71/114 (62.28%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K+TT SM+ Y+LK    + T +VGA V Q   G+   G  +  V+EA EY   FL  +P++ V+ N+D +H+D F+D D++K+ F++F ++I   G LV+  D +  + +++Q+
Sbjct:  113 KTTTTSMIGYILKKANYNPTVLVGAFVKQL-GGNFVIGSKEYLVVEACEYVDSFLKFNPTIGVILNIDNDHLDYFKDIDSIKNSFKKFAQKIPTSGFLVVNYDDKNVKDIINQL 225          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_ANADF (UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=murC PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 44/115 (38.26%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 646
            K+TT S+ A++L   G D TA+VG  V  F   +   G G   V+EADE DG FL + P++A+VTN+D EH+D ++ E+A++  F  F+ ++   G  ++C D    +SLL +++
Sbjct:  119 KTTTTSLAAHLLAHAGLDPTAVVGGKVNTFGSNAKL-GRGDYMVVEADESDGSFLHIPPTIAIVTNIDPEHLDHWKTEEALRKGFLDFVNRVPFYGRAILCIDHPTVQSLLPEVE 232          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_CORJK (UDP-N-acetylmuramate--L-alanine ligase OS=Corynebacterium jeikeium (strain K411) GN=murC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K++T SM    L+A G D +  +G  + +    +   G G+ FV EADE DG FL  SP +AVVTN++ +H+D F+ E A + +F +F  +I  GG LV+C D   + +L +++
Sbjct:  126 KTSTTSMAVAALQAAGQDPSFAIGGQLNRAGTNA-HNGTGEVFVAEADESDGSFLSYSPEIAVVTNIEPDHLDYFKTESAYREVFEKFAHRIVPGGFLVVCLDDPGSAALAEEL 238          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_DESAD (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=murC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT S+LA +      D T I+G  +  F   +   G G+  + EADE DG FL L+P + VVTN+D +H+D +  ++A+   FR+F+  I   G  V+CGD    + LL  IK+
Sbjct:  116 KTTTTSLLATIFTEAELDPTVIIGGRLNTFGSNARL-GDGQFLIAEADESDGSFLCLAPIITVVTNVDKDHLDFYGGQEAIDESFRKFMNSIPFYGMNVVCGDDPGVQRLLPSIKR 230          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_SYNAS (UDP-N-acetylmuramate--L-alanine ligase OS=Syntrophus aciditrophicus (strain SB) GN=murC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 45/118 (38.14%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 655
            K+TT SM+A V+ + G D T ++G  +      +   G G+  V EADE DG FL LSPS+AV+TN+D EH+D +   + +K  F +F   +   G  V+C D    +++L  IK+ T
Sbjct:  133 KTTTTSMIATVMASGGLDPTMVIGGKLGSIGSNARM-GHGEFIVAEADESDGSFLKLSPSLAVITNIDREHLDFYRGIEDIKDAFLQFANIVPFYGSAVLCLDDPHIKTILSDIKRKT 249          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_DESPS (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfotalea psychrophila GN=murC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 44/116 (37.93%), Postives = 67/116 (57.76%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K++T S++  +L   G D T +VG  V  F  G+   G G   V EADE DG FL LSP + VVTN+D EH+D + D + +K  F  F+ +I   G  ++C D +   ++L Q+++
Sbjct:  117 KTSTTSLIGCLLSQTGFDPTIVVGGKVDSF-GGNAKLGEGDFLVAEADESDGSFLKLSPVLEVVTNIDLEHLDYYTDIEHIKETFLSFIDKIPFYGAAIVCLDDENVAAILPQVQK 231          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_GEOUR (UDP-N-acetylmuramate--L-alanine ligase OS=Geobacter uraniireducens (strain Rf4) GN=murC PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT SM+A +L   G D T ++G  +      +   G G+  V EADE DG FL LSP++AVVTN+D +H+D ++D D +K  F +F+ ++   G  V+C D+     ++  +K+
Sbjct:  116 KTTTTSMVATILAKGGIDPTIVIGGRLNSIGTNARL-GQGQFLVAEADESDGSFLKLSPTIAVVTNIDADHLDFYKDIDEIKDTFVQFINKVPFYGLAVLCLDNGNIADIIPLVKK 230          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_SYNWW (UDP-N-acetylmuramate--L-alanine ligase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=murC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 47/129 (36.43%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSN 688
            K+TT SML  VL   G + + IVG  + Q  + +   G G  FV+EADE D  FL L P +A++TN++ +H+D ++  D ++  FR+F++QIR  G  ++ G     RSL+  +  +  L + G  +SN
Sbjct:  118 KTTTTSMLYMVLANCGTEPSFIVGGEL-QGSELNAKLGRGDYFVVEADESDASFLDLRPYIALITNVEDDHLDYYKSVDNIRKAFRQFVEQIRPEGFAMLYGGDAFNRSLVKDLTLNKRLLFYGEDLSN 245          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_BRASO (UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhizobium sp. (strain ORS278) GN=murC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 48/122 (39.34%), Postives = 72/122 (59.02%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L A G D T I G  +  +   +   GGG+  V+EADE DG FL L   VA+VTN+D EH+D F+  +AV+  FR F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGGLDPTVINGGIINAYGTNARL-GGGEWMVVEADESDGTFLKLPADVAIVTNVDPEHLDHFKTFEAVQDAFRAFVENVPFYGFAVMCIDHPVVQALVGKIEDRRIITY 238          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_ANASK (UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromyxobacter sp. (strain K) GN=murC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 44/116 (37.93%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT SM A++L   G D TA+VG  V  F   +   G G   V+EADE DG FL + P++A+VTN+D EH+D ++  DA++  F  F+ ++   G  ++C D    +S+L  +++
Sbjct:  119 KTTTTSMAAHLLAHAGLDPTAVVGGKVNAFGSNAKL-GKGDYMVVEADESDGSFLRIPPTIAIVTNIDPEHLDHWKTPDALRRGFVDFVNRVPFYGLAILCIDHPTVQSILPDVEK 233          
The following BLAST results are available for this feature:
BLAST of DR404625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_ANATD1.991e-1535.96UDP-N-acetylmuramate--L-alanine ligase OS=Anaeroce... [more]
MURC_ANADF1.991e-1538.26UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromy... [more]
MURC_CORJK3.397e-1537.72UDP-N-acetylmuramate--L-alanine ligase OS=Coryneba... [more]
MURC_DESAD4.436e-1537.93UDP-N-acetylmuramate--L-alanine ligase OS=Desulfov... [more]
MURC_SYNAS5.794e-1538.14UDP-N-acetylmuramate--L-alanine ligase OS=Syntroph... [more]
MURC_DESPS5.794e-1537.93UDP-N-acetylmuramate--L-alanine ligase OS=Desulfot... [more]
MURC_GEOUR7.567e-1537.07UDP-N-acetylmuramate--L-alanine ligase OS=Geobacte... [more]
MURC_SYNWW1.291e-1436.43UDP-N-acetylmuramate--L-alanine ligase OS=Syntroph... [more]
MURC_BRASO1.291e-1439.34UDP-N-acetylmuramate--L-alanine ligase OS=Bradyrhi... [more]
MURC_ANASK1.291e-1437.93UDP-N-acetylmuramate--L-alanine ligase OS=Anaeromy... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243O22 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243O22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404625 ID=DR404625; Name=DR404625; organism=Citrus sinensis; type=EST; length=709bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCT
CTCGTTCAAATCTAATCGAACCACACCTTCTATATTATTATTTATGAAGA
AGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAA
GAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTGGG
AATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAG
GAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGG
ATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGA
AGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATA
TGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATC
TGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGT
ATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCAT
ATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACAAG
ATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAGAT
CTATGGGGA
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