DR404625

Overview
NameDR404625
Unique NameDR404625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_CLOB6 (UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=murC PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 37/113 (32.74%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 640
            K+TT SML++V      D T +VG ++    +G++  G    F+ EA EY   FL   P +  + N+D +H+D ++D D +K+ F +F+K I   G+LV  G+ +  +S++ +
Sbjct:  122 KTTTTSMLSHVALKANVDPTILVGGNL-DIINGNVRVGKSDFFITEACEYKSSFLKFFPYIGAILNIDADHLDYYKDLDDIKNAFSKFIKLIPKDGYLVAYGEDKNIQSIIKE 233          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_SPHWW (UDP-N-acetylmuramate--L-alanine ligase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L A G D T I G  +  +   +   G     V+EADE DG FL L  ++AVVTN+D EH+D +   D VK  F  F++ +   G  ++C D    ++++ +++    + Y
Sbjct:  119 KTTTTSMVAALLDAGGVDPTVINGGIINSYGSNARL-GASDWMVVEADESDGSFLRLDGTIAVVTNIDPEHLDHYGSFDKVKDCFVEFVENVPFYGAALLCIDHPEVQAIIPRVRDRKVVTY 239          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_SALAI (UDP-N-acetylmuramate--L-alanine ligase OS=Salinispora arenicola (strain CNS-205) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 38/125 (30.40%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGG 676
            K+TT SM+  VL+  G D + ++G  + +   G+  +G G+ FV+EADE D  FL   P V+++TN++ +H++ + D   +++ F  F +     G +V C D   +R L + ++ +    Y+ G
Sbjct:  131 KTTTTSMVTMVLQQAGVDPSFVIGGEISEVGSGA-HHGTGEYFVVEADESDRSFLIYRPFVSIITNIEADHLNTYGDLANLEAAFADFARLTDPDGFVVTCADDAGSRRLAETLRAEGRRVYTYG 254          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RHOE4 (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K++T SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L   P+V VVTN++ +H+D F   +A   +F  F+ ++R GG L+ C D   +  L  +I
Sbjct:  124 KTSTTSMLVVALQHCGFDPSFAVGGELNEAGTNA-HHGSGDVFVAEADESDGSLLQYDPNVIVVTNIEADHLDYFGSVEAYVKVFDDFVDKLRPGGLLIACLDDPGSADLAKRI 236          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_HYDS0 (UDP-N-acetylmuramate--L-alanine ligase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 38/114 (33.33%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K+TT SM++++    G D T ++G  +  F   ++  G  +  + EADE DG FL L+  + VVTN+D EH+  ++D + +K  F +F+  +   G  V+  D    RS+L +I
Sbjct:  117 KTTTTSMISHISHIAGLDPTVLIGGILQTFGSNAVL-GKSELLISEADESDGSFLKLNSVINVVTNIDKEHIGYYKDYEDIKEAFVKFINNVPFYGASVVNIDDTGVRSILSKI 229          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_GRAFK (UDP-N-acetylmuramate--L-alanine ligase OS=Gramella forsetii (strain KT0803) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 35/100 (35.00%), Postives = 62/100 (62.00%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVI 601
            K+TT ++L ++LK  G  +TA +G  + +    ++   G K  V+EADE+D  FL LSP++A +T++D +H+DI+ D+  ++  FR F  ++   G L +
Sbjct:  125 KTTTTAILGHLLKETGAKVTAFLGG-ISEDIQSNLIMQGDKVVVVEADEFDRSFLKLSPNLAAITSMDADHLDIYGDKSELEKSFREFAAKVPEDGKLFV 223          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_GRABC (UDP-N-acetylmuramate--L-alanine ligase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 42/122 (34.43%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT S++A VL+A   D T I G  +  +   +   G G+  V+EADE DG FL L   +AVVTN+D EH+D +   +A+++ +++F+  I   G  V+C D    + ++ Q+     + Y
Sbjct:  119 KTTTTSLIAAVLEAAQLDPTVINGGIINAYGTNTRL-GAGEWMVVEADESDGSFLRLPAVIAVVTNMDPEHLDHWGTAEAMEAGYQQFVSNIPFYGFAVLCIDHPTVQKMIPQLSDHRIITY 239          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_FLAJ1 (UDP-N-acetylmuramate--L-alanine ligase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNF-VLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVI 601
            K+TT+S+L ++L   G D+TA VG  V  +    I  G GK   V+EADE+D  FL L P +A VT++D +H+DI+   DA+++ F  F  ++     L I
Sbjct:  122 KTTTSSILGHILHQSGADVTAFVGGIVENYNSNLI--GTGKTVTVVEADEFDRSFLHLHPDIACVTSMDADHLDIYGTSDAIQASFIEFASKVEDKSKLFI 220          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_BARBK (UDP-N-acetylmuramate--L-alanine ligase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K+TT SM+A +L A   D   I G  +  +   +   G G   V+EADE DG FL L   + VVTN+D EH+D +   DAV+  FR+F++ +   G  V+C D    ++L  +I
Sbjct:  118 KTTTTSMVAALLDAGNFDPMVINGGIINAYGTNARM-GNGNWMVVEADESDGTFLKLPADIVVVTNIDSEHLDHYGSFDAVRESFRQFVENVPFYGFAVMCLDHPEVQTLASRI 230          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_ALKOO (UDP-N-acetylmuramate--L-alanine ligase OS=Alkaliphilus oremlandii (strain OhILAs) GN=murC PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 36/115 (31.30%), Postives = 65/115 (56.52%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 646
            K+TT S+++ +++    D T +VG  + +   G+I  G  ++F+ EA EY   FL   P + ++ N+D +H+D F+D + +K  FR+F+  I   G L+  GD    + +L  I+
Sbjct:  123 KTTTTSLISLIMEYSNLDPTIMVGGELDEI-GGNIKIGNSEHFITEACEYVESFLKFYPFIGIILNIDEDHLDYFKDLNHIKEAFRKFINLIPQEGFLIANGDDANVQEILHSIE 236          
The following BLAST results are available for this feature:
BLAST of DR404625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_CLOB67.830e-1232.74UDP-N-acetylmuramate--L-alanine ligase OS=Clostrid... [more]
MURC_SPHWW1.023e-1134.43UDP-N-acetylmuramate--L-alanine ligase OS=Sphingom... [more]
MURC_SALAI1.023e-1130.40UDP-N-acetylmuramate--L-alanine ligase OS=Salinisp... [more]
MURC_RHOE41.023e-1135.96UDP-N-acetylmuramate--L-alanine ligase OS=Rhodococ... [more]
MURC_HYDS01.023e-1133.33UDP-N-acetylmuramate--L-alanine ligase OS=Hydrogen... [more]
MURC_GRAFK1.023e-1135.00UDP-N-acetylmuramate--L-alanine ligase OS=Gramella... [more]
MURC_GRABC1.023e-1134.43UDP-N-acetylmuramate--L-alanine ligase OS=Granulib... [more]
MURC_FLAJ11.023e-1139.60UDP-N-acetylmuramate--L-alanine ligase OS=Flavobac... [more]
MURC_BARBK1.023e-1137.72UDP-N-acetylmuramate--L-alanine ligase OS=Bartonel... [more]
MURC_ALKOO1.023e-1131.30UDP-N-acetylmuramate--L-alanine ligase OS=Alkaliph... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243O22 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243O22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404625 ID=DR404625; Name=DR404625; organism=Citrus sinensis; type=EST; length=709bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCT
CTCGTTCAAATCTAATCGAACCACACCTTCTATATTATTATTTATGAAGA
AGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAA
GAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTGGG
AATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAG
GAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGG
ATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGA
AGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATA
TGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATC
TGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGT
ATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCAT
ATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACAAG
ATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAGAT
CTATGGGGA
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