DR404625

Overview
NameDR404625
Unique NameDR404625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_SALTO (UDP-N-acetylmuramate--L-alanine ligase OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=murC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 37/126 (29.37%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGV 679
            K+TT SM+  VL+  G D + ++G  + +   G+  +G G  FV+EADE D  FL   P V+++TN++ +H++ + D   +++ F  F +     G ++ C D    R L + ++ +    Y+ G+
Sbjct:  131 KTTTTSMVTMVLQQAGVDPSFVIGGEISEVGSGA-HHGTGDYFVVEADESDRSFLIYRPFVSIITNIEADHLNTYGDLANLEAAFADFARLTDPDGFIITCADDVGGRRLAETLRAEGRRVYTYGI 255          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_PSEFS (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas fluorescens (strain SBW25) GN=murC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 655
            K+TT S++A V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+  ++ D + +K  F  FL  +   G  V+C D    R +L Q+K+ T
Sbjct:  127 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GTSRYLIAEADESDASFLHLQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVVCLDDPVVREILPQVKRPT 244          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_DECAR (UDP-N-acetylmuramate--L-alanine ligase OS=Dechloromonas aromatica (strain RCB) GN=murC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K+TT S++  +L   G D T ++G  +      +   G G   V EADE D  FL LSP ++VVTN+D +H++ +  D + +KS F  FL ++   G  V+CGD    R +L ++
Sbjct:  116 KTTTTSLVTSILAEGGIDPTFVIGGRL-NAAGANARLGSGDFLVAEADESDASFLFLSPVISVVTNIDADHMETYGHDFERLKSAFVDFLNRLPFYGVAVVCGDDANIRDILPRV 229          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_CYTH3 (UDP-N-acetylmuramate--L-alanine ligase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=murC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIF--YGGGKNFVL-EADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLV 598
            K+TT+SM A+++   G   +A +G     +    +   +G G  +V+ EADEYD  FL LSP +AV+ N+D +H+DI+ D  +    F  +LK+++ GG ++
Sbjct:  123 KTTTSSMAAHIMHESGMPCSAFLGGITQNYNTNILIGNHGDGAGWVVAEADEYDRSFLQLSPDIAVINNMDPDHLDIYSDVQSFYDSFNEYLKKLKPGGIVI 224          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_BARHE (UDP-N-acetylmuramate--L-alanine ligase OS=Bartonella henselae GN=murC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K+TT SM+A +L A   D   I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D +    AV+  FR+F++ +   G  V+C D    +SL  +I
Sbjct:  118 KTTTTSMIAALLDAGSFDPMVINGGIINAYGTNARM-GEGDWMVVEADESDGTFLKLPADIAVVTNIDREHLDHYGSFAAVRDAFRQFVENVPFYGFAVLCIDHPEVQSLASRI 230          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RICBR (UDP-N-acetylmuramate--L-alanine ligase OS=Rickettsia bellii (strain RML369-C) GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  272 CTRQARSQTRKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVL-EADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            C+        K+TT S++A + +A G   T I G  +      +  Y G  N+++ EADE D  F+ +  ++A++TN+D EH+D ++D D + + FR F+  +   G  V C D +  R L++ I +   + Y
Sbjct:  114 CSVAVSGSHGKTTTTSLVACLFEAAGLHPTVINGGIINNRSTNA--YLGSSNYLIAEADESDATFISIPSTIAIITNIDPEHLDYYKDFDTLINAFRSFITNLPFYGFAVCCIDHKIVRELVNNITERKVITY 244          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RICB8 (UDP-N-acetylmuramate--L-alanine ligase OS=Rickettsia bellii (strain OSU 85-389) GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 40/133 (30.08%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  272 CTRQARSQTRKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVL-EADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            C+        K+TT S++A + +A G   T I G  +      +  Y G  N+++ EADE D  F+ +  ++A++TN+D EH+D ++D D + + FR F+  +   G  V C D +  R L++ I +   + Y
Sbjct:  114 CSVAVSGSHGKTTTTSLVACLFEAAGLHPTVINGGIINNRSTNA--YLGSSNYLIAEADESDATFISIPSTIAIITNIDPEHLDYYKDFDTLINAFRSFITNLPFYGFAVCCIDHKIVRELVNNITERKVITY 244          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_ORITB (UDP-N-acetylmuramate--L-alanine ligase OS=Orientia tsutsugamushi (strain Boryong) GN=murC PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 37/114 (32.46%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K+TT +++A + +A G   T I G  +      + + G G  F+ EADE D  F+ +  ++AV+TN+D EH+D +++ D + S FR+F+  +   G  V C D    ++L+ +I
Sbjct:  124 KTTTTALIACIFEACGLHPTVITGGIMNNRATNA-YLGDGDYFIAEADESDATFIKIPATIAVITNIDVEHLDFYKNFDNLISAFRKFIINLPYDGFAVACIDDITVQNLIAKI 236          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_NOVAD (UDP-N-acetylmuramate--L-alanine ligase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 42/122 (34.43%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L A G D T I G  +  +   +   G     V+EADE DG FL L  ++AVVTN+D EH+D +   + VKS F  F++ +   G  ++C D    ++++ +++    + Y
Sbjct:  119 KTTTTSMVACLLDAGGIDPTVINGGIINSYGSNARL-GDSDWMVVEADESDGSFLRLDGTLAVVTNIDPEHLDHYGSFERVKSAFVEFIENVPFYGAAMLCIDHPEVQAIIPKVRDRRVVTY 239          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_GEOMG (UDP-N-acetylmuramate--L-alanine ligase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDE-DAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT SM+A  L   G D T ++G  +      +   G G+  V EADE DG FL LSP++AVVTN+D +H+D +    + +K  F  F+ +I   G  V+C + +    +L ++K+
Sbjct:  116 KTTTTSMVATALTHGGIDPTIVIGGKLNTLGTNAKL-GQGQFLVAEADESDGSFLKLSPTIAVVTNIDADHLDFYTGGIEQIKDTFVDFINKIPFYGLAVLCLEDRNIAEILPRVKK 231          
The following BLAST results are available for this feature:
BLAST of DR404625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_SALTO1.336e-1129.37UDP-N-acetylmuramate--L-alanine ligase OS=Salinisp... [more]
MURC_PSEFS1.336e-1136.13UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_DECAR1.336e-1135.65UDP-N-acetylmuramate--L-alanine ligase OS=Dechloro... [more]
MURC_CYTH31.336e-1135.29UDP-N-acetylmuramate--L-alanine ligase OS=Cytophag... [more]
MURC_BARHE1.336e-1138.60UDP-N-acetylmuramate--L-alanine ligase OS=Bartonel... [more]
MURC_RICBR1.744e-1130.08UDP-N-acetylmuramate--L-alanine ligase OS=Ricketts... [more]
MURC_RICB81.744e-1130.08UDP-N-acetylmuramate--L-alanine ligase OS=Ricketts... [more]
MURC_ORITB1.744e-1132.46UDP-N-acetylmuramate--L-alanine ligase OS=Orientia... [more]
MURC_NOVAD1.744e-1134.43UDP-N-acetylmuramate--L-alanine ligase OS=Novosphi... [more]
MURC_GEOMG1.744e-1135.90UDP-N-acetylmuramate--L-alanine ligase OS=Geobacte... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243O22 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243O22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404625 ID=DR404625; Name=DR404625; organism=Citrus sinensis; type=EST; length=709bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCT
CTCGTTCAAATCTAATCGAACCACACCTTCTATATTATTATTTATGAAGA
AGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAA
GAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTGGG
AATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAG
GAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGG
ATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGA
AGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATA
TGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATC
TGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGT
ATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCAT
ATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACAAG
ATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAGAT
CTATGGGGA
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