DR404625

Overview
NameDR404625
Unique NameDR404625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_COREF (UDP-N-acetylmuramate--L-alanine ligase OS=Corynebacterium efficiens GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 631
            K++T SM    L+A G D +  +G  + +    +   G G+ FV EADE D   L  +P +AVVTN++ +H+D F+  +A   +F  F  ++  GG LV+C D   A +L
Sbjct:  134 KTSTTSMAVVALQAAGMDPSFAIGGQLNKAGTNA-HQGTGEAFVAEADESDASLLRYTPEIAVVTNIEPDHLDFFKTPEAYFQVFEDFADRLTPGGTLVVCLDDPGAAAL 242          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_CAUSK (UDP-N-acetylmuramate--L-alanine ligase OS=Caulobacter sp. (strain K31) GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 44/115 (38.26%), Postives = 65/115 (56.52%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 646
            K+TT SM+A +L A   D T + G  +  +   +   G G   V+EADE DG FL L  +VA+VTN+D EH+D +   DAVK  F+ F++ I   G   +C D    ++L  +I+
Sbjct:  123 KTTTTSMVAALLDAGALDPTVVNGGIINAYGTNAKV-GEGDWIVVEADESDGSFLKLKSTVAIVTNIDAEHLDHWGTFDAVKKGFQDFIENIPFYGFAAVCTDHPEVQALTARIE 236          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_BORPE (UDP-N-acetylmuramate--L-alanine ligase OS=Bordetella pertussis GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 634
            K+TT S++A VL A G D T ++G  +      +   G G+  V+EADE D  FL L P +A+VTN+D +H+D +  D   +KS F  F +++   G  ++C D    R ++
Sbjct:  116 KTTTTSLVASVLAAGGLDPTFVIGGRLTS-AGANARLGQGEYIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAILCADDANVREIM 226          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_BORPA (UDP-N-acetylmuramate--L-alanine ligase OS=Bordetella parapertussis GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 634
            K+TT S++A VL A G D T ++G  +      +   G G+  V+EADE D  FL L P +A+VTN+D +H+D +  D   +KS F  F +++   G  ++C D    R ++
Sbjct:  116 KTTTTSLVASVLAAGGLDPTFVIGGRLTS-AGANARLGQGEYIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAILCADDANVREIM 226          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_BORBR (UDP-N-acetylmuramate--L-alanine ligase OS=Bordetella bronchiseptica GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 634
            K+TT S++A VL A G D T ++G  +      +   G G+  V+EADE D  FL L P +A+VTN+D +H+D +  D   +KS F  F +++   G  ++C D    R ++
Sbjct:  116 KTTTTSLVASVLAAGGLDPTFVIGGRLTS-AGANARLGQGEYIVVEADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAILCADDANVREIM 226          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_BARQU (UDP-N-acetylmuramate--L-alanine ligase OS=Bartonella quintana GN=murC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 44/114 (38.60%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K+TT SM+A +L A   D   I G  +  +   +   G G   V+EADE DG FL L   +AVVTN+D EH+D +    AV+  FR+F++ +   G  V+C D    +SL  +I
Sbjct:  118 KTTTTSMIAALLDAGRFDPMVINGGIINAYGTNARM-GSGDWMVVEADESDGTFLKLPADIAVVTNIDREHLDHYGSFCAVREAFRQFVENVPFYGFAVLCLDHPEVQSLASRI 230          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_PSEF5 (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=murC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 655
            K+TT S+LA V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+  ++ D + +K  F  FL  +   G  V+C D    R +L Q+K+ T
Sbjct:  127 KTTTTSLLASVFAAGGLDPTFVIGGRLNAAGTNAQL-GTSRYLIAEADESDASFLHLQPLVAVVTNIDADHMATYDGDFNKLKKTFVDFLHNLPFYGLAVMCLDDPVVREILPQVKRPT 244          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_LEPCP (UDP-N-acetylmuramate--L-alanine ligase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=murC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 41/117 (35.04%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT S++  VL   G D T ++G  +      S   G G   V+EADE D  FL L P ++V+TN+D +H+D +  D   +K  F  FL ++   G  ++CGD    RS++  I +
Sbjct:  116 KTTTTSLVTSVLAEAGLDPTFVIGGKLNSAGANSAL-GKGDYIVVEADESDASFLNLLPVLSVITNIDADHMDTYGHDFARLKQAFVEFLHKMPFYGAAILCGDDPGVRSIIPMISR 231          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_LAWIP (UDP-N-acetylmuramate--L-alanine ligase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=murC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 37/116 (31.90%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT S+ A V    G D T ++G  +  +   +   G G+  + EADE DG FL L P + VVTN+D +H+D +   + ++  F  F+  +   G  V+CGD    + +L ++ +
Sbjct:  116 KTTTTSLTATVFDTAGFDPTVVIGGVLNAY-GANARLGQGQYLIAEADESDGSFLLLLPIINVVTNIDLDHLDYYRSFEEIEHAFVTFMNNVPFYGMNVVCGDDPGVQRVLPRVNR 230          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_AZOVD (UDP-N-acetylmuramate--L-alanine ligase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=murC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 655
            K+TT S++A V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+D +E D   +K  F  FL  +   G  V+C D    R +L  + + T
Sbjct:  129 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GSSRYLIAEADESDASFLHLQPMVAVVTNIDADHMDTYEGDFSRLKKTFVDFLHNLPFYGLAVLCVDDPVVREILPLVARPT 246          
The following BLAST results are available for this feature:
BLAST of DR404625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_COREF1.744e-1135.45UDP-N-acetylmuramate--L-alanine ligase OS=Coryneba... [more]
MURC_CAUSK1.744e-1138.26UDP-N-acetylmuramate--L-alanine ligase OS=Caulobac... [more]
MURC_BORPE1.744e-1135.71UDP-N-acetylmuramate--L-alanine ligase OS=Bordetel... [more]
MURC_BORPA1.744e-1135.71UDP-N-acetylmuramate--L-alanine ligase OS=Bordetel... [more]
MURC_BORBR1.744e-1135.71UDP-N-acetylmuramate--L-alanine ligase OS=Bordetel... [more]
MURC_BARQU1.744e-1138.60UDP-N-acetylmuramate--L-alanine ligase OS=Bartonel... [more]
MURC_PSEF52.278e-1136.97UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_LEPCP2.278e-1135.04UDP-N-acetylmuramate--L-alanine ligase OS=Leptothr... [more]
MURC_LAWIP2.278e-1131.90UDP-N-acetylmuramate--L-alanine ligase OS=Lawsonia... [more]
MURC_AZOVD2.278e-1136.13UDP-N-acetylmuramate--L-alanine ligase OS=Azotobac... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243O22 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243O22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404625 ID=DR404625; Name=DR404625; organism=Citrus sinensis; type=EST; length=709bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCT
CTCGTTCAAATCTAATCGAACCACACCTTCTATATTATTATTTATGAAGA
AGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAA
GAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTGGG
AATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAG
GAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGG
ATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGA
AGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATA
TGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATC
TGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGT
ATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCAT
ATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACAAG
ATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAGAT
CTATGGGGA
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