DR404625

Overview
NameDR404625
Unique NameDR404625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_NITEC (UDP-N-acetylmuramate--L-alanine ligase OS=Nitrosomonas eutropha (strain C91) GN=murC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 38/117 (32.48%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT S++A +L   G D T ++G  +    D     G G+  V+EADE D  FL L P + VVTN+D +H+  +E D + +K  F  F++ +   G  V+C D     +++  + +
Sbjct:  116 KTTTTSLVASILAEAGQDPTFVIGGRLKTV-DSHARLGKGEFIVVEADESDASFLYLQPVLTVVTNIDADHMSTYEHDFNRLKQTFVEFIEHLPFYGMAVLCADDPHVSAIIPMVSK 231          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_MARMM (UDP-N-acetylmuramate--L-alanine ligase OS=Maricaulis maris (strain MCS10) GN=murC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 40/122 (32.79%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT S++A ++ A G D T I G  +  +   +   G G    +EADE DG FL L  +VA+VTN+D EH++ +   D ++  F +F++ +   G  V+C D    +SL  +++    + Y
Sbjct:  121 KTTTTSLVAVLMDAAGVDPTVINGGIISAYGSNAKV-GLGDWMAVEADESDGSFLKLRSTVAIVTNIDPEHMEHYGTFDVLRQAFFQFVENLPFYGFAVLCTDHPEVQSLASRVEDRRVITY 241          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_SULSY (UDP-N-acetylmuramate--L-alanine ligase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 36/116 (31.03%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT SM+  VL   G D T ++G  +  +   +   G G+  V E+DE DG FL L+P++  + N+D EH+  ++D + +K  F  F  ++   G   +  D +  +S+L  I++
Sbjct:  117 KTTTTSMVGTVLGKTGFDPTVVIGGKLEAYGSNAKL-GRGEFLVTESDESDGSFLKLTPTIVSINNIDLEHIGFYKDLEDIKKAFVAFANKVPFYGAAAVNIDDENVKSILPYIER 231          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RHOSR (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodococcus sp. (strain RHA1) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 40/114 (35.09%), Postives = 60/114 (52.63%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K++T SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L   P V VVTN++ +H+D F   +A   +F  F  ++  GG LV C D   + +L  ++
Sbjct:  124 KTSTTSMLVVALQHCGFDPSFAVGGELNEAGTNA-HHGSGDVFVAEADESDGSLLQYEPDVVVVTNVEADHLDYFGSTEAYIQVFDDFAARLSPGGLLVACLDDPGSAALAQRV 236          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RHOOB (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodococcus opacus (strain B4) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 40/114 (35.09%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K++T SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L   P+V VVTN++ +H+D F   +A   +F  F  ++  GG LV C D   + +L  ++
Sbjct:  124 KTSTTSMLVVALQHCGFDPSFAVGGELNEAGTNA-HHGSGDVFVAEADESDGSLLQYDPNVVVVTNVEADHLDYFGSPEAYIQVFDDFAARLSHGGLLVACLDDPGSAALAQRV 236          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_PSEU5 (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas stutzeri (strain A1501) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 43/119 (36.13%), Postives = 61/119 (51.26%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 655
            K+TT S+LA V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+  +  D   +K  F  FL  +   G  V+C D    R ++ QI + T
Sbjct:  129 KTTTTSLLASVFAAGGLDPTFVIGGRLTAAGTNAQL-GSSRYLIAEADESDASFLHLQPMVAVVTNIDADHMSTYGGDFGKLKKTFVEFLHNLPFYGLAVLCVDDPVVREIIPQIGRPT 246          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_PSEU2 (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 655
            K+TT S++A V  A G D T ++G  +      +   G  +  + EADE D  FL L P VAVVTN+D +H+  +E D + +K  F  FL  +   G  V+C D    R +L  +K+ T
Sbjct:  127 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GTSRYLIAEADESDASFLHLQPLVAVVTNIDADHMATYEGDFNKLKKTFVEFLHNLPFYGLAVMCIDDPVVREILPLVKRPT 244          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_PSEMY (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas mendocina (strain ymp) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 655
            K+TT S+LA V  A G D T ++G  +      +   G  +  + EADE D  FL L P V+VVTN+D +H+  +  D + +K  F  FL  +   G  V+C D    R LL Q+ + T
Sbjct:  129 KTTTTSLLASVFAAGGLDPTFVIGGRLNAAGTNAQL-GSSRFLIAEADESDASFLHLQPMVSVVTNIDADHMSTYGGDFNRLKKTFIEFLHNLPFYGLAVLCVDDPVVRELLPQVGRPT 246          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_PSEAE (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas aeruginosa GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 655
            K+TT S++A V  A G D T ++G  +      +   G  +  V EADE D  FL L P VAVVTN+D +H+  +  D + +K  F  FL  +   G  V+C D    R +L QI + T
Sbjct:  126 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GASRYLVAEADESDASFLHLQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPT 243          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_PSEAB (UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=murC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDT 655
            K+TT S++A V  A G D T ++G  +      +   G  +  V EADE D  FL L P VAVVTN+D +H+  +  D + +K  F  FL  +   G  V+C D    R +L QI + T
Sbjct:  126 KTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQL-GASRYLVAEADESDASFLHLQPMVAVVTNIDADHMATYGGDFNKLKKTFVEFLHNLPFYGLAVMCVDDPVVREILPQIARPT 243          
The following BLAST results are available for this feature:
BLAST of DR404625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_NITEC5.076e-1132.48UDP-N-acetylmuramate--L-alanine ligase OS=Nitrosom... [more]
MURC_MARMM5.076e-1132.79UDP-N-acetylmuramate--L-alanine ligase OS=Maricaul... [more]
MURC_SULSY6.629e-1131.03UDP-N-acetylmuramate--L-alanine ligase OS=Sulfurih... [more]
MURC_RHOSR6.629e-1135.09UDP-N-acetylmuramate--L-alanine ligase OS=Rhodococ... [more]
MURC_RHOOB6.629e-1135.09UDP-N-acetylmuramate--L-alanine ligase OS=Rhodococ... [more]
MURC_PSEU56.629e-1136.13UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_PSEU26.629e-1136.13UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_PSEMY6.629e-1136.13UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_PSEAE6.629e-1136.97UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]
MURC_PSEAB6.629e-1136.97UDP-N-acetylmuramate--L-alanine ligase OS=Pseudomo... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243O22 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243O22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404625 ID=DR404625; Name=DR404625; organism=Citrus sinensis; type=EST; length=709bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCT
CTCGTTCAAATCTAATCGAACCACACCTTCTATATTATTATTTATGAAGA
AGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAA
GAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTGGG
AATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAG
GAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGG
ATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGA
AGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATA
TGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATC
TGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGT
ATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCAT
ATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACAAG
ATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAGAT
CTATGGGGA
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