DR404625

Overview
NameDR404625
Unique NameDR404625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6217 contig Csv1_Contig6217:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_CALS8 (UDP-N-acetylmuramate--L-alanine ligase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=murC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQD 652
            K+TT SM+ Y+LK    + T +VGA V Q   G+   G  +  V+EA EY   FL  +PS+ V+ N+D +H+D F+D +++K  FR+F  +I   G +V   D +   S+   +KQ+
Sbjct:  113 KTTTTSMIGYILKKALLNPTVLVGAFVKQL-GGNFCIGSSEYLVVEACEYVDSFLNFNPSIGVILNIDNDHLDYFKDIESIKDSFRKFALKIPQNGFIVANLDDENVYSVASYLKQN 228          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_SORC5 (UDP-N-acetylmuramate--L-alanine ligase OS=Sorangium cellulosum (strain So ce56) GN=murC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K+TT S++A VL+A G D T +VG  +      +   G G   V EADE DG FL L+P++AVVTN+D EH+D +   + +K  F  F  ++   G  V+C D    + LL +I
Sbjct:  117 KTTTTSLVATVLRAAGLDPTVVVGGKMAALGTNARL-GAGDLLVAEADESDGSFLRLTPTIAVVTNIDPEHLDHYGTHERIKDAFVEFAARVPFYGLAVLCLDHPHVQDLLPRI 229          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RHIME (UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobium meliloti GN=murC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 47/122 (38.52%), Postives = 72/122 (59.02%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L A G D T I G  +  +   +   G G+  V+EADE DG FL L   +AVVTN+D EH+D +   DAV++ FR+F++ +   G  V+C D    +S++ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGGLDPTVINGGIINAYGTNARM-GAGEWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGSFDAVRAAFRQFVENVPFYGFGVLCLDHPEVQSMVGKIEDRKVVTY 238          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_MYCPA (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium paratuberculosis GN=murC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 631
            K+TT SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAVVTN++ +H+D +   DA  ++F  F++++  GG LV+C D   A +L
Sbjct:  126 KTTTTSMLIVALQHCGRDPSFAVGGEMGEAGTNA-HHGSGDCFVAEADESDGSLLEYTPDVAVVTNIETDHLDFYGSADAYVAVFDAFVERLAPGGALVVCVDDPGAAAL 234          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_MYCA1 (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium avium (strain 104) GN=murC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 631
            K+TT SML   L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAVVTN++ +H+D +   DA  ++F  F++++  GG LV+C D   A +L
Sbjct:  126 KTTTTSMLIVALQHCGRDPSFAVGGEMGEAGTNA-HHGSGDCFVAEADESDGSLLEYTPDVAVVTNIETDHLDFYGSADAYVAVFDAFVERLAPGGALVVCVDDPGAAAL 234          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_GEOSM (UDP-N-acetylmuramate--L-alanine ligase OS=Geobacter sp. (strain M21) GN=murC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT SM+A +L   G D T ++G  +      +   G G+  V EADE DG FL LSP++AVVTN+D +H+D +   + +K  F  F+ +I   G  V+C D+     +L ++K+
Sbjct:  116 KTTTTSMVATILSKGGIDPTIVIGGRLNSLGTNARL-GQGQFLVAEADESDGSFLLLSPTIAVVTNIDADHLDFYSGIEEIKDTFVEFINKIPFYGLAVLCLDNGNVADVLPRVKK 230          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_CARHZ (UDP-N-acetylmuramate--L-alanine ligase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=murC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 44/116 (37.93%), Postives = 65/116 (56.03%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT+SM+AYVL+  G D    VG  +      +   G G+  V EADE DG FL L P  AV+TN++ +H+D ++  + +K  F++F   IR  G  V C D+   R +L   K+
Sbjct:  127 KTTTSSMIAYVLEKEGFDPVIAVGGEIVDLGYNAKA-GQGEYMVAEADESDGSFLKLLPYAAVITNIEADHLDYYQSFEEIKKAFKKFADNIRPEGFGVFCWDNLQVREMLKGYKK 241          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_ARTAT (UDP-N-acetylmuramate--L-alanine ligase OS=Arthrobacter aurescens (strain TC1) GN=murC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 640
            KSTT SM+A +LK  G D +  +GA+VP     +  +G    FV EADE DG FL   P +AVVTN++ +H+D +   +AV + F  F   +   G L+ C D   AR+L D+
Sbjct:  122 KSTTTSMVAVLLKEAGLDPSFAIGANVPALGVNAA-HGSSDIFVAEADESDGSFLNYRPLIAVVTNVEADHLDHYGTPEAVFASFDDFAALLPAQGVLLACSDDAGARALADR 233          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_SYNFM (UDP-N-acetylmuramate--L-alanine ligase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=murC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 42/116 (36.21%), Postives = 69/116 (59.48%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT SM++ VL   G D T ++G  +  +   +   G G   V EADE DG FL L P++AVVTN+D EH+D + D   ++  F +F+ +I   G  V+C + +  +S+L ++++
Sbjct:  117 KTTTTSMVSTVLARGGLDPTVVIGGKLNAWGTNAKL-GNGDFMVAEADESDGTFLLLPPTIAVVTNIDLEHLDFYRDLAHIQETFLQFINKIPFYGQAVLCLEDENIQSILPRVEK 231          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RHIL3 (UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=murC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT S++A +L+A G D T I G  +  +   +   G G+  V+EADE DG FL L   VAV+TN+D EH+D + + DAV++ FR+F++ +   G  V+C D    +SL+ +I+    + Y
Sbjct:  118 KTTTTSLVATLLEAGGLDPTVINGGIINAYGTNARM-GEGEWMVVEADESDGTFLKLPADVAVITNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQSLVGRIEDRKIITY 238          
The following BLAST results are available for this feature:
BLAST of DR404625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_CALS84.905e-1436.75UDP-N-acetylmuramate--L-alanine ligase OS=Caldicel... [more]
MURC_SORC56.406e-1439.47UDP-N-acetylmuramate--L-alanine ligase OS=Sorangiu... [more]
MURC_RHIME6.406e-1438.52UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobiu... [more]
MURC_MYCPA6.406e-1439.09UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_MYCA16.406e-1439.09UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_GEOSM6.406e-1437.07UDP-N-acetylmuramate--L-alanine ligase OS=Geobacte... [more]
MURC_CARHZ6.406e-1437.93UDP-N-acetylmuramate--L-alanine ligase OS=Carboxyd... [more]
MURC_ARTAT6.406e-1440.71UDP-N-acetylmuramate--L-alanine ligase OS=Arthroba... [more]
MURC_SYNFM8.366e-1436.21UDP-N-acetylmuramate--L-alanine ligase OS=Syntroph... [more]
MURC_RHIL38.366e-1438.52UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobiu... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243O22 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243O22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404625 ID=DR404625; Name=DR404625; organism=Citrus sinensis; type=EST; length=709bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCT
CTCGTTCAAATCTAATCGAACCACACCTTCTATATTATTATTTATGAAGA
AGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAA
GAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTGGG
AATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAG
GAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGG
ATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGA
AGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATA
TGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATC
TGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGT
ATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCAT
ATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACAAG
ATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAGAT
CTATGGGGA
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