DR404625

Overview
NameDR404625
Unique NameDR404625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6217 contig Csv1_Contig6217:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_CHLPB (UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobium phaeobacteroides (strain BS1) GN=murC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 40/116 (34.48%), Postives = 66/116 (56.90%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT +M+A +L   G+  T ++G  +     GS   G GK  V+EADEYD  FL L+PS+AV+ +L+ EH D + D +A++  F  F  ++   G +  C D    R ++ ++ +
Sbjct:  118 KTTTTAMIATMLIGAGESPTVMIGG-ISDDLKGSTMVGSGKYMVIEADEYDRAFLKLTPSLAVINSLEMEHTDTYADIEALRDAFVAFANKVPFYGRVFCCVDWPEVRKIIPRMNR 232          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_ARTS2 (UDP-N-acetylmuramate--L-alanine ligase OS=Arthrobacter sp. (strain FB24) GN=murC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 45/115 (39.13%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 646
            KSTT SM+  +L+  G D T  +GA+VP     +   G    FV EADE DG FL   P +AVVTN++ +H+D +   +AV   F  F + +   G LV C D   AR+L ++ +
Sbjct:  127 KSTTTSMVTVLLQGAGLDPTFAIGANVPSLGVNAAS-GTSDIFVAEADESDGSFLNYRPHIAVVTNVEPDHLDYYGTAEAVYESFDSFTELLPADGVLVACADDPGARALAERTR 240          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RHOP2 (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopseudomonas palustris (strain HaA2) GN=murC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 47/122 (38.52%), Postives = 69/122 (56.56%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   VA+VTN+D EH+D F+  DAV+  FR F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGDFDPTVINGGIINAYGTNARL-GAGDWMVVEADESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQDAFRNFVENVPFYGFAVMCIDHPVVQALVGKIEDRRIITY 238          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_NITWN (UDP-N-acetylmuramate--L-alanine ligase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=murC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L A   D T I G  +  +   +   G G+  V+EADE DG FL L   VA+VTN+D EH+D F+  DAV+  FR F++ +   G  V+C D    ++++ +I+    + Y
Sbjct:  118 KTTTTSMVATLLDAGDFDPTVINGGIINAYGTNARL-GAGEWMVVEADESDGTFLKLPTDVAIVTNVDAEHLDHFKTFDAVQDAFRSFVENVPFYGFAVMCIDHPVVQAMVGRIEDRRIITY 238          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_METSB (UDP-N-acetylmuramate--L-alanine ligase OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=murC PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT S++A +L+A G D T I G  +  +   S   G G   V+EADE DG FL L   VA++TN+D EH+D F   + ++  FR F++ I   G  V+C D    + L+ QI+    + Y
Sbjct:  118 KTTTTSLVATLLEAGGFDPTVINGGIINAYGTNSRL-GAGDWMVVEADESDGTFLKLPADVAIITNIDPEHLDHFGTFENIRKAFRSFVENIPFYGFAVMCLDHPTVQELVGQIEDRRVITY 238          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_SACEN (UDP-N-acetylmuramate--L-alanine ligase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=murC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 640
            K++T SML   L+    D +  +G  + +    +  +G G  FV EADE DG FL  +PSVAVVTN++ +H+D     +A   +F+RF+++I  GG L+ C D   A  L DQ
Sbjct:  137 KTSTTSMLTVALQHCRLDPSFAIGGDLNE-SGANAHHGDGGVFVAEADESDGSFLVFAPSVAVVTNVEPDHLDHHGTAEAYTEVFQRFVERIEPGGVLIACADDAGAALLADQ 248          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RHOPB (UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopseudomonas palustris (strain BisB18) GN=murC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L A   D T I G  +  +   +   G G+  V+EADE DG FL L   VA+VTN+D EH+D F+  DAV+  FR F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGEFDPTVINGGIINAYGTNARL-GAGEWMVVEADESDGTFLKLPADVAIVTNVDPEHLDHFKTFDAVQEAFRDFVENVPFYGFAVMCIDHPVVQALVGKIEDRRIITY 238          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_RHILO (UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobium loti GN=murC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 46/122 (37.70%), Postives = 71/122 (58.20%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L+A G D T I G  +  +   +   G G+  V+EADE DG FL L   +AVVTN+D EH+D +   D V+  FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVATLLEAGGLDPTVINGGIINAYGTNARM-GDGEWMVVEADESDGTFLKLPADIAVVTNIDPEHLDHYGSFDKVREAFRQFVENVPFYGFGVMCTDHPEVQALVGRIEDRRVITY 238          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_METNO (UDP-N-acetylmuramate--L-alanine ligase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=murC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIK 646
            K+TT S++A +L A G D T I G  +  +   +   G G   V+EADE DG FL L   +A+VTN+D EH+D F   DA+K  FR F+  I   G  V+C D    + L+ +I+
Sbjct:  118 KTTTTSLVATLLDAGGLDPTVINGGIINAYGTNARM-GEGDWMVVEADESDGTFLKLPADIAIVTNIDPEHLDHFGSFDAIKDAFRAFIDNIPFYGFAVMCIDHPTVQDLVGRIE 231          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_UNCTG (UDP-N-acetylmuramate--L-alanine ligase OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=murC PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI 643
            K+TT S+ + VL   G D T ++G  +      +   G G   V+EADE DG FL LSP + VVTN+D +H+D ++  + +K  F + +  I   G  +IC D++  R ++ QI
Sbjct:  116 KTTTTSLTSLVLHNGGLDPTIVIGGRLKNLKTNAKL-GRGDYIVVEADESDGSFLRLSPIITVVTNIDNDHLDYYDSMENLKEAFVKHINCIPFYGTAIICSDNEVVRKIIPQI 228          
The following BLAST results are available for this feature:
BLAST of DR404625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_CHLPB1.093e-1334.48UDP-N-acetylmuramate--L-alanine ligase OS=Chlorobi... [more]
MURC_ARTS21.093e-1339.13UDP-N-acetylmuramate--L-alanine ligase OS=Arthroba... [more]
MURC_RHOP21.427e-1338.52UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopse... [more]
MURC_NITWN1.427e-1337.70UDP-N-acetylmuramate--L-alanine ligase OS=Nitrobac... [more]
MURC_METSB1.427e-1337.70UDP-N-acetylmuramate--L-alanine ligase OS=Methyloc... [more]
MURC_SACEN1.864e-1338.94UDP-N-acetylmuramate--L-alanine ligase OS=Saccharo... [more]
MURC_RHOPB1.864e-1338.52UDP-N-acetylmuramate--L-alanine ligase OS=Rhodopse... [more]
MURC_RHILO1.864e-1337.70UDP-N-acetylmuramate--L-alanine ligase OS=Rhizobiu... [more]
MURC_METNO1.864e-1340.00UDP-N-acetylmuramate--L-alanine ligase OS=Methylob... [more]
MURC_UNCTG2.434e-1335.96UDP-N-acetylmuramate--L-alanine ligase OS=Uncultur... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243O22 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243O22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404625 ID=DR404625; Name=DR404625; organism=Citrus sinensis; type=EST; length=709bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCT
CTCGTTCAAATCTAATCGAACCACACCTTCTATATTATTATTTATGAAGA
AGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAA
GAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTGGG
AATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAG
GAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGG
ATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGA
AGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATA
TGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATC
TGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGT
ATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCAT
ATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACAAG
ATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAGAT
CTATGGGGA
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