DR404625

Overview
NameDR404625
Unique NameDR404625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6217 contig Csv1_Contig6217:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_PELPD (UDP-N-acetylmuramate--L-alanine ligase OS=Pelobacter propionicus (strain DSM 2379) GN=murC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 43/117 (36.75%), Postives = 68/117 (58.12%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDE-DAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT SM A +L   G D T ++G  +      +   G GK  + EADE DG FL LSP++AVVTN+D +H+D +    + +K  F +F+ ++   G  V+C D    R++L ++K+
Sbjct:  116 KTTTTSMAASILGHAGIDPTIVIGGKLNAIGTNAQL-GQGKFLLAEADESDGSFLVLSPTIAVVTNIDADHLDHYSGGIEEIKDTFVKFINKVPFYGMAVLCLDDPNIRAILPRVKK 231          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_DESRM (UDP-N-acetylmuramate--L-alanine ligase OS=Desulfotomaculum reducens (strain MI-1) GN=murC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSL 631
            K+TT SM A +L+    D T I+G  +     G+   G G+  V EADE DG FL L P++AVVTN++ +H+D +   + +   FR+FL ++   G  VIC D    + +
Sbjct:  120 KTTTTSMTALILEENSFDPTIIIGGDLSNI-GGNAKLGQGEYMVAEADESDGSFLLLDPNIAVVTNIEDDHLDYYGTRENIAKAFRQFLAKLSAEGLAVICLDDPVLKEI 228          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_BORBU (UDP-N-acetylmuramate--L-alanine ligase OS=Borrelia burgdorferi GN=murC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 41/131 (31.30%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQI--KQDTGLKYSGGVVSN 688
            K+TT + L  +   +G +   IVG+ V  F D S   G    F++E  EY   FL  SP++ ++TN+D+EHVD F++ +A++  F +++  ++  G L+I  D      +  QI  K  +   Y  G +S+
Sbjct:  125 KTTTTAFLGVLFNKLGLNPNVIVGSSVKDFKDNSAIAGISNIFIVETCEYKKHFLNFSPNMLILTNVDYEHVDFFKNYEALEEAFLQYINNLKKNGILIINSDDNNLLKIKRQINRKDISIFSYGSGDLSD 255          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_AGRVS (UDP-N-acetylmuramate--L-alanine ligase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=murC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L+A   D T I G  +  +   +   G G+  V+EADE DG FL L   VAVVTN+D EH+D + + DAV++ FR+F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLEAGQLDPTVINGGIINAYGTNARM-GEGEWMVVEADESDGTFLKLPADVAVVTNIDPEHLDHYGNFDAVRAAFRQFVENVPFYGFGVMCLDHPEVQALVGRIEDRKVVTY 238          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_PHEZH (UDP-N-acetylmuramate--L-alanine ligase OS=Phenylobacterium zucineum (strain HLK1) GN=murC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGD 610
            K+TT SM+A +L A G D T + G  +  +   +   G G   V+EADE DG FL L  +VAVVTN+D EH+D + D +AVK  F+ F++ I   G   +C D
Sbjct:  121 KTTTTSMVAAILDAGGLDPTVVNGGIINAYGTNAKV-GAGDWIVVEADESDGTFLKLKSTVAVVTNIDPEHLDHYGDFEAVKKAFQDFVENIPFYGFAAVCLD 222          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_MYCUA (UDP-N-acetylmuramate--L-alanine ligase OS=Mycobacterium ulcerans (strain Agy99) GN=murC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQ 640
            K+TT SM    L+  G D +  VG  + +    +  +G G  FV EADE DG  L  +P VAVVTN++ +H+D +   +A   +F  F++++  GG LV+C D   + +L ++
Sbjct:  126 KTTTTSMAIVALQHCGRDPSFAVGGELGEAGTNA-HHGSGDYFVAEADESDGSLLEYTPHVAVVTNIEADHLDFYGSTEAYVGVFDAFVERLAPGGALVVCADDPGSAALAER 237          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_GEOLS (UDP-N-acetylmuramate--L-alanine ligase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=murC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDE-DAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT SM+A VL   G D T ++G  +      +   G GK  V EADE DG FL LSP++AVVTN+D +H+D +    + +K  F  F+ ++   G  V+C + +    ++ +IK+
Sbjct:  116 KTTTTSMVATVLTHAGIDPTIVIGGKLNTLGSNAKL-GQGKFLVAEADESDGSFLTLSPTIAVVTNIDADHLDYYTGGLEQIKDTFVSFINKVPFYGLAVLCQEDRNINEIIPRIKK 231          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_CORDI (UDP-N-acetylmuramate--L-alanine ligase OS=Corynebacterium diphtheriae GN=murC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 43/130 (33.08%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQ 691
            K++T SM    L+A G D +  +G  + +    +   G GK FV EADE D   L   P +AVVTN++ +H+D F+  +A   +F  F ++++ GG LV+C D   A +L ++ K    ++  G   + Q
Sbjct:  122 KTSTTSMAVVALQAAGKDPSFAIGGQLNKAGTNA-HDGTGKAFVAEADESDASLLRYKPDIAVVTNIEPDHLDFFKTSEAYFKVFDDFAERVQPGGTLVVCLDDPHAAALGEKFKDRMTVRGYGSPAAAQ 250          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_BORAP (UDP-N-acetylmuramate--L-alanine ligase OS=Borrelia afzelii (strain PKo) GN=murC PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 38/116 (32.76%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 649
            K+TT + L  +   +G +   IVG+ V  F D S   G    F+ E  EY   FL  SP++ ++TN+D+EHVD FE+ +A++  F +++  ++  G L+I  D      +  QI +
Sbjct:  125 KTTTTAFLGLLFNKLGLNPNVIVGSSVKDFGDNSAIAGISNIFIAETCEYKKHFLHFSPNMLILTNIDYEHVDFFENYEALEDAFLQYINNLKKNGILIINSDDNNLLKIKRQINR 240          
BLAST of DR404625 vs. ExPASy Swiss-Prot
Match: MURC_XANP2 (UDP-N-acetylmuramate--L-alanine ligase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=murC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 45/122 (36.89%), Postives = 68/122 (55.74%), Query Frame = 2
Query:  302 KSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKY 667
            K+TT SM+A +L A   D T I G  +  +   +   G G   V+EADE DG FL L   VA+VTN+D EH+D F+  D V+  F+ F++ +   G  V+C D    ++L+ +I+    + Y
Sbjct:  118 KTTTTSMVAALLDAGNFDPTVINGGIINAYGTNARL-GDGNWMVVEADESDGTFLKLPTEVAIVTNVDPEHLDHFKTFDKVQDAFKTFVENVPFYGFAVMCIDHPVVQALVGRIEDRRVITY 238          
The following BLAST results are available for this feature:
BLAST of DR404625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
MURC_PELPD5.423e-1336.75UDP-N-acetylmuramate--L-alanine ligase OS=Pelobact... [more]
MURC_DESRM5.423e-1337.27UDP-N-acetylmuramate--L-alanine ligase OS=Desulfot... [more]
MURC_BORBU5.423e-1331.30UDP-N-acetylmuramate--L-alanine ligase OS=Borrelia... [more]
MURC_AGRVS5.423e-1338.52UDP-N-acetylmuramate--L-alanine ligase OS=Agrobact... [more]
MURC_PHEZH7.082e-1342.72UDP-N-acetylmuramate--L-alanine ligase OS=Phenylob... [more]
MURC_MYCUA7.082e-1335.40UDP-N-acetylmuramate--L-alanine ligase OS=Mycobact... [more]
MURC_GEOLS7.082e-1336.75UDP-N-acetylmuramate--L-alanine ligase OS=Geobacte... [more]
MURC_CORDI7.082e-1333.08UDP-N-acetylmuramate--L-alanine ligase OS=Coryneba... [more]
MURC_BORAP7.082e-1332.76UDP-N-acetylmuramate--L-alanine ligase OS=Borrelia... [more]
MURC_XANP29.250e-1336.89UDP-N-acetylmuramate--L-alanine ligase OS=Xanthoba... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243O22 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243O22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404625 ID=DR404625; Name=DR404625; organism=Citrus sinensis; type=EST; length=709bp
GGGGAATGGGAAAATTGGTGGCATCAGTTTCCAACTCACTTCATTCTCCA
GGCAGCTTTCTGGAGAAAATTGAAACCTATTTTTTCGGAAACATTCCTCT
CTCGTTCAAATCTAATCGAACCACACCTTCTATATTATTATTTATGAAGA
AGAAAAATAGCGTTTCAGTTTTAACAAATTGCACATTTAAAAGAAATGAA
GAATGCATTGTCGATTTCGAAAATCGAAAGGGGTGGATTCATTTCGTGGG
AATTGGTGGTTCTGGGTTATCTGCACTCGCCAAGCTCGCTCTCAAACAAG
GAAGAGTACAACTGCAAGCATGCTTGCCTATGTTCTGAAGGCAATGGGGG
ATGATCTTACAGCTATAGTTGGAGCACATGTGCCACAGTTTCCAGACGGA
AGCATATTTTATGGAGGTGGCAAAAACTTTGTGCTGGAGGCTGATGAATA
TGATGGTTGCTTCCTGGGATTATCACCCTCTGTAGCTGTAGTGACAAATC
TGGATTGGGAGCATGTTGATATCTTTGAAGATGAGGATGCTGTTAAAAGT
ATTTTTAGGAGATTCCTGAAGCAGATCAGGGTGGGTGGACATCTTGTCAT
ATGCGGGGACAGTCAATGTGCACGGTCCTTGCTGGATCAAATAAAACAAG
ATACTGGATTGAAGTATTCTGGTGGAGTGGTTTCTAATCAAAGTTCAGAT
CTATGGGGA
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