DR404605

Overview
NameDR404605
Unique NameDR404605
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: YCGM_ECOLI (Uncharacterized protein ycgM OS=Escherichia coli (strain K12) GN=ycgM PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.772e-44
Identity = 92/195 (47.18%), Postives = 122/195 (62.56%), Query Frame = 2
Query:  155 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSA-VPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITG 736
            +K+V VG NYA H KE+G+AVP+EPVLF+KP ++       + +P    S+HHEVELAV+IG   R   E      + GY VALD+T R++Q   K AG PW  AK  D   P+S  +P +    DP N  L L V+GE RQ+G+T DMI KI  LI+++S   TL  GDV+LTGTP GVGP++ G ++T    G
Sbjct:   17 SKVVCVGSNYAKHIKEMGSAVPEEPVLFIKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDG 211          
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: UGL_BURCJ (Ureidoglycolate lyase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=BceJ2315_61450 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.648e-40
Identity = 96/203 (47.29%), Postives = 120/203 (59.11%), Query Frame = 2
Query:  158 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 739
            K + +G NYA HA E G  VPKEPV+F K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL++DG   Q G+T+ M+F +  LI+++S+ MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   72 KFIGIGLNYADHAAEAGMPVPKEPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQI---ERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLIAYLSTCMTLQPGDVITTGTPPGVGMGIKPSPVFLKAGQMVRLGIDGL 271          
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: UGL_BURM1 (Ureidoglycolate lyase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=Bmul_3283 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.458e-40
Identity = 97/203 (47.78%), Postives = 120/203 (59.11%), Query Frame = 2
Query:  158 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 739
            K + +G NYA HA E G  VPKEPV+F K TSS  G    I++P        EVEL VVIG   +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP +L+LWL+VDG   Q G+T+ M+F +  LI+++SS MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   72 KFIGIGLNYADHAAEAGMPVPKEPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAPCKDVDEARALDYVAGYCVVNDVSEREWQI---ERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQSLDLWLEVDGHRYQNGNTRTMVFTVAQLIAYLSSCMTLQPGDVITTGTPPGVGMGIKPAPVYLKAGQMVRLGIEGL 271          
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: UGL_BURCH (Ureidoglycolate lyase OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_5521 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.458e-40
Identity = 95/203 (46.80%), Postives = 120/203 (59.11%), Query Frame = 2
Query:  158 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 739
            K + +G NYA HA E G  VPKEPV+F K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL++DG   Q G+T+ M+F +  L++++S+ MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   72 KFIGIGLNYADHAAEAGMPVPKEPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQI---ERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVITTGTPPGVGMGVKPSPVFLKAGQTVRLGIEGL 271          
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: UGL_BURCC (Ureidoglycolate lyase OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_4750 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.458e-40
Identity = 95/203 (46.80%), Postives = 120/203 (59.11%), Query Frame = 2
Query:  158 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 739
            K + +G NYA HA E G  VPKEPV+F K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL++DG   Q G+T+ M+F +  L++++S+ MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   72 KFIGIGLNYADHAAEAGMPVPKEPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQI---ERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVITTGTPPGVGMGVKPSPVFLKAGQTVRLGIEGL 271          
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: UGL_BURCA (Ureidoglycolate lyase OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_5340 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.458e-40
Identity = 95/203 (46.80%), Postives = 120/203 (59.11%), Query Frame = 2
Query:  158 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 739
            K + +G NYA HA E G  VPKEPV+F K TSS  G    I++P        EVEL VVIG K +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL++DG   Q G+T+ M+F +  L++++S+ MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   72 KFIGIGLNYADHAAEAGMPVPKEPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGAKCKDVDEARALDYVAGYCVVNDVSEREWQI---ERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVITTGTPPGVGMGVKPSPVFLKAGQTVRLGIEGL 271          
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: Y1656_METJA (Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii GN=MJ1656 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.516e-40
Identity = 87/195 (44.62%), Postives = 123/195 (63.08%), Query Frame = 2
Query:  155 TKIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 739
            TKI+ VG NY  HAKEL   +P+ P++FLKPTS+ + N   I  P     + +EVELA+VIG+K +++ +  A DY+ GY +  D+TAR++Q         WT AK  DTF PI   + K    DP NL +  +V+GEI+QK +TK+MIF +  L+  ++SIMTL+ GD+I TGTP GVG +K G  +   I G+
Sbjct:   38 TKIICVGLNYIDHAKELNMEIPEYPIIFLKPTSAIIYNEDYIIRPRISKRVDYEVELAIVIGKKCKNIKKDEANDYIMGYTILNDVTARDLQQKDGQ----WTRAKSFDTFCPIGPRIVKDI--DPMNLNIECRVNGEIKQKSNTKNMIFDVYELVEFVASIMTLYPGDIISTGTPPGVGELKAGDVVECEIEGI 226          
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: UGL_BURS3 (Ureidoglycolate lyase OS=Burkholderia sp. (strain 383) GN=Bcep18194_B0137 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.703e-40
Identity = 95/203 (46.80%), Postives = 119/203 (58.62%), Query Frame = 2
Query:  158 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 739
            K + +G NYA HA E G  VPKEPV+F K TSS  G    I++P        EVEL VVIG   +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL++DG   Q G+T+ M+F +  LI+++SS MTL  GDVI TGTP GVG      PV  K GQ +  G+ GL
Sbjct:   72 KFIGIGLNYADHAAEAGMPVPKEPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGATCKDVDEARALDYVAGYCVVNDVSEREWQI---ERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEIDGHRYQNGNTRTMVFTVAQLIAYLSSCMTLQPGDVITTGTPPGVGMGIKPSPVFLKAGQMVRLGVEGL 271          
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: HPAG_ECOLX (4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase OS=Escherichia coli GN=hpaG PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.006e-39
Identity = 84/194 (43.30%), Postives = 125/194 (64.43%), Query Frame = 2
Query:  161 IVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTP-ISSVLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 739
            + A+G NYA HA EL    P+EP++FLK  ++  G+  T   P+ ++ +H+E EL VVIG++AR+V E  AMDYV GY V  D   R+   +     L     K +D  TP +S+++PK A+PDPHNL L   V+GE+RQ+G+T D+IF +P+LI+++S  MTL  GD+I TGTP+G+  V  G ++   + G+
Sbjct:  225 LFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLR---VKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLSDVVPGDEVVVEVEGV 415          

HSP 2 Score: 76.6406 bits (187), Expect = 1.617e-13
Identity = 53/169 (31.36%), Postives = 85/169 (50.30%), Query Frame = 2
Query:  212 AVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISSVLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKI 718
            A PK  V F+KP ++ +G G  I  P   + +     +A+++G+ A  V E  A +Y+ GYA+A D++  E     +S   P   AK +D F PI   +  S V    NL ++ +++G      +T D+      L+S +S   TL  GD IL GTPQ    ++ G ++
Sbjct:   30 APPKTAVWFIKPRNTVIGCGEPIPFPQG-EKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPE-----ESFYRPAIKAKCRDGFCPIGETVALSNVD---NLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQARVEIQPGDRV 189          
BLAST of DR404605 vs. ExPASy Swiss-Prot
Match: UGL_BURCM (Ureidoglycolate lyase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=Bamb_4846 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.314e-39
Identity = 95/203 (46.80%), Postives = 119/203 (58.62%), Query Frame = 2
Query:  158 KIVAVGRNYAAHAKELGNAVPKEPVLFLKPTSSYLGNGGTIEVPHPLDSLHHEVELAVVIGQKARDVPETTAMDYVGGYAVALDMTAREIQSSAKSAGLPWTVAKGQDTFTPISS-VLPKSAVPDPHNLELWLKVDGEIRQKGSTKDMIFKIPYLISHISSIMTLFEGDVILTGTPQGVG------PV--KVGQKITAGITGL 739
            K + +G NYA HA E G  VPKEPV+F K TSS  G    I++P        EVEL VVIG   +DV E  A+DYV GY V  D++ RE Q      G  W   KG DTF PI   ++ +  VPDP  L+LWL+VDG   Q G+T+ M+F +  L++++S+ MTL  GDVI TGTP GVG      PV  K GQ +  GI GL
Sbjct:   72 KFIGIGLNYADHAAEAGMPVPKEPVVFGKWTSSICGPNDGIDIPKGSVKTDWEVELGVVIGTTCKDVDEARALDYVAGYCVVNDVSEREWQI---ERGGQWDKGKGFDTFGPIGPWLVTRDEVPDPQRLDLWLEVDGHRYQNGNTRTMVFTVAQLVAYLSTCMTLQPGDVITTGTPPGVGMGIKPSPVFLKAGQTVRLGIDGL 271          
The following BLAST results are available for this feature:
BLAST of DR404605 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
YCGM_ECOLI1.772e-4447.18Uncharacterized protein ycgM OS=Escherichia coli (... [more]
UGL_BURCJ2.648e-4047.29Ureidoglycolate lyase OS=Burkholderia cepacia (str... [more]
UGL_BURM13.458e-4047.78Ureidoglycolate lyase OS=Burkholderia multivorans ... [more]
UGL_BURCH3.458e-4046.80Ureidoglycolate lyase OS=Burkholderia cenocepacia ... [more]
UGL_BURCC3.458e-4046.80Ureidoglycolate lyase OS=Burkholderia cenocepacia ... [more]
UGL_BURCA3.458e-4046.80Ureidoglycolate lyase OS=Burkholderia cenocepacia ... [more]
Y1656_METJA4.516e-4044.62Uncharacterized protein MJ1656 OS=Methanocaldococc... [more]
UGL_BURS37.703e-4046.80Ureidoglycolate lyase OS=Burkholderia sp. (strain ... [more]
HPAG_ECOLX1.006e-3943.304-hydroxyphenylacetate degradation bifunctional is... [more]
UGL_BURCM1.314e-3946.80Ureidoglycolate lyase OS=Burkholderia ambifaria (s... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243N23 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243N23 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404605 ID=DR404605; Name=DR404605; organism=Citrus sinensis; type=EST; length=763bp
TGTGTTGGTCCCGNNNNNTCGGCCATTACGGCCGGGGGAACTGATGATGT
TGCTGGGTAGCTAGCACAGAACGAATTTTGGGTCAATCAGAATCAGAATC
GCTTAAGCGATGGCGACTGCATCATCAGCCGTACAAAAGCTCATTCAAGC
AGGCACCAAGATCGTGGCCGTTGGCCGTAACTATGCGGCTCACGCCAAAG
AGCTCGGCAACGCCGTGCCCAAGGAGCCGGTTTTGTTTCTCAAACCGACG
TCGTCTTATTTAGGAAACGGAGGGACCATCGAGGTACCTCATCCCCTGGA
TTCGCTTCATCATGAAGTGGAGCTTGCAGTCGTGATCGGACAGAAAGCTC
GAGATGTGCCTGAAACCACTGCCATGGACTATGTTGGAGGCTATGCAGTG
GCACTTGATATGACTGCGAGGGAAATCCAATCTTCTGCCAAGTCTGCAGG
TCTTCCGTGGACAGTGGCTAAAGGGCAGGACACCTTCACACCAATTAGCT
CTGTCCTACCAAAGTCAGCAGTGCCTGACCCTCACAACCTGGAACTATGG
TTAAAGGTTGATGGAGAGATTCGACAGAAAGGCTCCACTAAGGATATGAT
TTTTAAGATACCATATCTAATTAGCCACATAAGTTCAATTATGACACTTT
TTGAAGGAGATGTCATATTAACAGGCACTCCACAGGGCGTTGGCCCTGTA
AAAGTTGGTCAAAAGATAACAGCTGGTATAACGGGCCTCCTGGATGTAAA
CTTTGATATTGAA
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