CX070714

Overview
NameCX070714
Unique NameCX070714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_SOLTU (30S ribosomal protein S3, chloroplastic OS=Solanum tuberosum GN=rps3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            +QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:  162 IQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218          
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_SOLLC (30S ribosomal protein S3, chloroplastic OS=Solanum lycopersicum GN=rps3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            +QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:  162 IQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218          
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_SOLBU (30S ribosomal protein S3, chloroplastic OS=Solanum bulbocastanum GN=rps3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            +QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DE+
Sbjct:  162 IQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEE 218          
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_LIRTU (30S ribosomal protein S3, chloroplastic OS=Liriodendron tulipifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  163 VQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIYGVLGIKIWIFVDEQ 219          
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_DRIGR (30S ribosomal protein S3, chloroplastic OS=Drimys granadensis GN=rps3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  160 VQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIYGVLGIKIWIFVDEQ 216          
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_CALFG (30S ribosomal protein S3, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.362e-23
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYTVRTIYGVLGIKIWIFVDEQ 218          
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_VITVI (30S ribosomal protein S3, chloroplastic OS=Vitis vinifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.778e-23
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSY VRTIYGVLGIKIWIFVDE+
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYRVRTIYGVLGIKIWIFVDEE 218          
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_MORIN (30S ribosomal protein S3, chloroplastic OS=Morus indica GN=rps3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.778e-23
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 168
            +QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIFVDE
Sbjct:  160 IQIAGRIDGKEIARVEWIREGRVPLQTIKAKIDYCSYTVRTIYGALGIKIWIFVDE 215          
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_COFAR (30S ribosomal protein S3, chloroplastic OS=Coffea arabica GN=rps3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.778e-23
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 171
            VQIAGR+DGKEIAR EWIR GRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:  162 VQIAGRIDGKEIARVEWIRRGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFIDEE 218          
BLAST of CX070714 vs. ExPASy Swiss-Prot
Match: RR3_PANGI (30S ribosomal protein S3, chloroplastic OS=Panax ginseng GN=rps3 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.322e-23
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 VQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 165
            VQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+D
Sbjct:  162 VQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFID 216          
The following BLAST results are available for this feature:
BLAST of CX070714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_SOLTU1.362e-2387.7230S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_SOLLC1.362e-2387.7230S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_SOLBU1.362e-2387.7230S ribosomal protein S3, chloroplastic OS=Solanum... [more]
RR3_LIRTU1.362e-2391.2330S ribosomal protein S3, chloroplastic OS=Liriode... [more]
RR3_DRIGR1.362e-2391.2330S ribosomal protein S3, chloroplastic OS=Drimys ... [more]
RR3_CALFG1.362e-2391.2330S ribosomal protein S3, chloroplastic OS=Calycan... [more]
RR3_VITVI1.778e-2391.2330S ribosomal protein S3, chloroplastic OS=Vitis v... [more]
RR3_MORIN1.778e-2391.0730S ribosomal protein S3, chloroplastic OS=Morus i... [more]
RR3_COFAR1.778e-2389.4730S ribosomal protein S3, chloroplastic OS=Coffea ... [more]
RR3_PANGI2.322e-2392.7330S ribosomal protein S3, chloroplastic OS=Panax g... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_18E05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-18E05-I10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070714 ID=CX070714; Name=CX070714; organism=Citrus sinensis; type=EST; length=781bp
GTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCGCGCGCCGAATG
GATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGCTAAAATTGATT
ATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGGGAATCAAAATT
TGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGTCTTTAGAGCCC
CCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCTTTTTATCTTCA
ATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGTTGAATAAAAAT
TCGATTGATTTTTTTTTTTTTATATAATTGCTATGCTTAGTGTGCGACTC
GTTGGTTTTTTTTAGGGCTAGGATTCCAAAAAATGGACCGTCCTGTAGTA
TGAACTAATAACTATAGCACTAATAACCAACTCATTGCTTCGTATTATCT
GAATCCAAAGAACCAGTCAAGATATAATATAGTGGTCATATCGTTGTAGC
AACTGAAATTTGCATAACATAAAAACCCAATCTGATTGTAGGTTGTGAAG
TTCGAAGTTGTGAAAGAAAATCGAAAAGCATGCGGATAAATGGAAGGATG
AGAGAAAGAGAGAAAGAAAATATCAATGATATAAGATTCCAATATGTAAG
GTCTGTAAGTCATCTCATAAAAAACAGTGTAATATAGCATCAATAATGAT
TCATCCCTAACTAGATGAATCCGCTCATAGAACAAAAAAAATCAAGAGCC
CCGAGCCAATAAAAACTGAAGAAAATTGACT
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