DR404525 | Citrus Genome Database

Overview


Name	DR404525
Unique Name	DR404525
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	417

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SECCE (Photosystem II reaction center protein I OS=Secale cereale GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SACOF (Photosystem II reaction center protein I OS=Saccharum officinarum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SACHY (Photosystem II reaction center protein I OS=Saccharum hybrid GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_RANMC (Photosystem II reaction center protein I OS=Ranunculus macranthus GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_POPTR (Photosystem II reaction center protein I OS=Populus trichocarpa GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_POPAL (Photosystem II reaction center protein I OS=Populus alba GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PLAOC (Photosystem II reaction center protein I OS=Platanus occidentalis GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PHAVU (Photosystem II reaction center protein I OS=Phaseolus vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PHAAO (Photosystem II reaction center protein I OS=Phalaenopsis aphrodite subsp. formosana GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PELHO (Photosystem II reaction center protein I OS=Pelargonium hortorum GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of DR404525 vs. ExPASy Swiss-Prot

BLAST of DR404525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
PSBI_SECCE	2.731e-13	100.00	Photosystem II reaction center protein I OS=Secale...	[more]
PSBI_SACOF	2.731e-13	100.00	Photosystem II reaction center protein I OS=Saccha...	[more]
PSBI_SACHY	2.731e-13	100.00	Photosystem II reaction center protein I OS=Saccha...	[more]
PSBI_RANMC	2.731e-13	100.00	Photosystem II reaction center protein I OS=Ranunc...	[more]
PSBI_POPTR	2.731e-13	100.00	Photosystem II reaction center protein I OS=Populu...	[more]
PSBI_POPAL	2.731e-13	100.00	Photosystem II reaction center protein I OS=Populu...	[more]
PSBI_PLAOC	2.731e-13	100.00	Photosystem II reaction center protein I OS=Platan...	[more]
PSBI_PHAVU	2.731e-13	100.00	Photosystem II reaction center protein I OS=Phaseo...	[more]
PSBI_PHAAO	2.731e-13	100.00	Photosystem II reaction center protein I OS=Phalae...	[more]
PSBI_PELHO	2.731e-13	100.00	Photosystem II reaction center protein I OS=Pelarg...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAE-PNP1243J20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243J20 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR404525 ID=DR404525; Name=DR404525; organism=Citrus sinensis; type=EST; length=417bp
GGGGAATCTATTCTCNTTTTTCCTTATTCCCCAAAAACCTGATTTGGANN
NTGTGTAANNCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA